Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03418 ATGGGTACAGAACTCATGAGAATATGTGTCAAAGAAGATAATGATGAATTTCCATCAGTTCCACCTGGCTTTGAGTCATATACATCTTTGTCACTGAAGAGTGTAGAAGACAGCGAGAAACAAAATGATACTAACAAAACTAGTTGTTCAGCCTCCACAAGTGCTTCTGAATCACAGTCAACTCTGGTGGAAACTGAAGTTAAAGTTAGTGATACTGCAAAGGTTCCAAGGTCTCTCCGACGAAGACCGTGGATTAACTATGGACAATATGATAACAGTTCAGAGGAAGAGTTTGACTGTGAACGCCTTGATCAAAATTTCTCTTCAAGACCTTGCCTTCCTAGGGGAGTCATCCGTGGATGTACAGATTGCAGTCATTGTCAAaagGTTGTTGCCACATGGCGACCAGAAGATGCTTGCAGGCCAACCCTTGAGGATGCTCCGGTCTTCTACCCAACTGAAGAGgagTTTCAAGATACTTTGAAGTACATAGAAAGCATTCGCTCCAGAGCTGAATCGTATGGAATCTGTCGCATTGTTCCCCCTTCATCTTGGAAACCTCCCTGCCCTCTGAAGGAAAAGAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATTTCAAGGGttcataataatatgaaaaggaaaaggagacgATGCACAAGAATGGGGGTGGACAATGGAACTGGTAGAGGGCAAAACGTGGGATTTTGTGAGGCTGAAACGTTCGGGTTTGAACCTGGTCCACAATTTACCTTGGAAGTATTTCAGAGGTATGCAGATGAATTCAAGGCCAGATACTTCAGGAAAAATGAGAATGTTTCTCATCTGGGAGGTAATACAACCATGTTCGAAGGCTCCTGGGAGCCTCCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTAGAAAGACCTACTGAAGAAATAGAGGTGCTTTACGGAGCTGATCTGGAAACAGGGGTTTTTGGGAGTGGTTTTCCTAGAAAGTCTGATGAAGTTAGTTCTGTTTCACATGATCAGTATGTAAAATCTGGCTggaatttgaataattttgctAGGCTTCCTGGATCTGTTCTCTCTTATGAAAGCGGCGATATATCTGGTGTTCTGGTCCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAGGATCACcatttatattctttgaaTTACATGCATTGGGGCGCTCCAAAAATATGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAAGCCATGAAAAAGCATTTACCAGACCTTTTTGAAGAACAACCTGATTTGCTTCATAAGCTAGTGACGCAGCTTTCTCCTTCCATCTTAAAGAACGAAGGATTAACTGTCTATAGGTGTGTCCAGAACTCTGGAGAGTTTGTTCTGACCTTCCCTCGAGCCTATCATTCTGGGTTCAACTGCGGCTTTAACTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGCTGCCCCATGGCCAGGTTGCTATAGAGCTATACCAGGAGCAGAGGCGCAGGACTTCTTTATCACATGATAAACTCTTGCTTGGGGCTGCTAGGGAAGCAGTTCGAGCATGCTGGGAGGTTGATTTGCTAAAGAAGAATACTCCAGATATTCTAAGATGGAAAGATGTCTCTGGAAGAGATGGACTTCTAACAAAAGCACTCAAGaCACGTGTTGAGAGGGAACAAGTAAGGAGGGAGTTTCTGTGCAATTCTGTACAAGTATTCAAAATGGAGAGCAGTTTTGATGCCACAAGCGAAAGGGAATGTGCTATTTGCCTTTTTGATTTACACCTATCTGCTACTGGTTGCCGTTGTTCTCCAGATCGATATGCTTGCTTGGACCATGCAAGACAGTTGTGTTCTTGTGCCTGGGATTCCAAATACTGTCTCTTTCGCTATGATATCTGTGAATTAAATATTCTGGTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATATAGATTGGCAAAATTAGATCTTGGGCTAGCACTAACTTCTTATAtctcaaatgaaataatactCAAGGAATTGGCAATgcattcttcaaaattttatgattcatCATTGGTTACTGTGCATAAAGAGATGGCCTTACATCCATCAGCTATTTCTGTAGAAGATAATTTGATAGATGTCCCAATTGAGAATCAAGTGAATTCAGCAAAAGGTACTGAGTGGAAGAGAGCGCCAGGAGCTGTGTCTCAGTTGAGTCATATGAAGGAAACATCTAATAGCTCAACACCTGCAAGTGAGATAGCTAGTCACAAGACTGATTCCAAGAAAGAAGAATCTATTATTTGTAGATCAAATTTAAGAACCTCTTGTCAGTTGTCTCAAGAGGACACATCCTATGGTATATGTCTACCTCTAGCTGATCGTGGAGCTGAGAAAAGTTCACCTTATGGACAGGACAGTATTATACTTCTTagtgatgatgaaaatgatgaagcaAAGATGCCAGATTCAGTTAAAGGGAAGGAACTTTCTCGAAGGCTCACAGATTCTAGTGATAAAGCAAGCCCATGTAATAATATAGAATATACAGACTTGACTATCCCTGTGACCAATGCGGCTGTGATGGGTGAAAAGGATGTTATTTCAGTACTTCATGAAGACATGAATTCTCAATCAACTCATCTTGTGCATGTGAAACAGGAACATGTAGACAGCCAACCTTCTCTTGATTCTCCTGTAGATTTTTCTTCCCAAATAGGCTTTATTAATGCTGGTTCAGTCAGAAATATTCAGGCTTCCTCAACACATAACACCATACATCATTGTGTGGAAACTTTGGAGAGTTGTTCTCAGAATTCACAGCATTCTAGCACTGTAAATCCTAAGAACGAGGATAGCCATGAAAAGTTTGGAGGGCAAGCCACTTCTAATTTGACAGACAGTGTAAGAGCTGTCCATGGAAATCTGTCTTGCAGTTCAAACAGTTTGGAAAGGTACAACCGTCAGAAGGGTCCCCGTATTGCAAAGGTTGTCCGGCGTATCAACTGTAATGTTGAACTTCTAGACTTTGGAATTGTGCTTTCTGGAAAGTCATGGTGTAACAGTCGAGCCATATTTCCCAAGGGGTTTAGAAGCCGcgttaaatatattaatgttttaGATCCAACCAGCATGTGTTATTATGTTTCAGAAATTCTTGATGCTGGACGTGTTGGACCTCTATTTATGGTGTCCTTGGAACATTGTCTAAGTGAGGTCTTTGCTCATATTTCAGCTGTAAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAAGAGATCGCAAAGCAACATAAACTGGGAAGAAAGAACCTTCCTCCACTACAGCCTCCTGGGAGCCTTGATGGGTTTGAAATGTTTGGATTTTCTTCGCCAGCAATAGTGCAGGCTATCGAGGCATTGGATCGAAACCGAGTTTGTAATGAATATTGGGATTCCCGGCCCTATTCCCGGCCTCAAGGGCAGATTCCACAGGCTTCACATTCTCAACCCAATGAAGATGGTGGAAACTCGGAAAGAAATGTAGTAGGAGTCCTCAAGAATGAGGCCATGCCAGCCGTAGATGGTGCAGCATTGAAGGCCCTATTTAAAAAGGCCAGCCCAGAAGAATTGAAGTCTCTGTACAGCATTCTAAGTGACAATAGCCCAGCAACTGACCGTACCCTAATTGCTAGTCTTCTCAATCAAGAGATTCGCAGCCGTactagata 3773 0.4108 MGTELMRICVKEDNDEFPSVPPGFESYTSLSLKSVEDSEKQNDTNKTSCSASTSASESQSTLVETEVKVSDTAKVPRSLRRRPWINYGQYDNSSEEEFDCERLDQNFSSRPCLPRGVIRGCTDCSHCQKVVATWRPEDACRPTLEDAPVFYPTEEEFQDTLKYIESIRSRAESYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRDSMRKISRVHNNMKRKRRRCTRMGVDNGTGRGQNVGFCEAETFGFEPGPQFTLEVFQRYADEFKARYFRKNENVSHLGGNTTMFEGSWEPPVENIEGEYWRMVERPTEEIEVLYGADLETGVFGSGFPRKSDEVSSVSHDQYVKSGWNLNNFARLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDACKLEEAMKKHLPDLFEEQPDLLHKLVTQLSPSILKNEGLTVYRCVQNSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQVAIELYQEQRRRTSLSHDKLLLGAAREAVRACWEVDLLKKNTPDILRWKDVSGRDGLLTKALKTRVEREQVRREFLCNSVQVFKMESSFDATSERECAICLFDLHLSATGCRCSPDRYACLDHARQLCSCAWDSKYCLFRYDICELNILVEALEGKLSAVYRLAKLDLGLALTSYISNEIILKELAMHSSKFYDSSLVTVHKEMALHPSAISVEDNLIDVPIENQVNSAKGTEWKRAPGAVSQLSHMKETSNSSTPASEIASHKTDSKKEESIICRSNLRTSCQLSQEDTSYGICLPLADRGAEKSSPYGQDSIILLSDDENDEAKMPDSVKGKELSRRLTDSSDKASPCNNIEYTDLTIPVTNAAVMGEKDVISVLHEDMNSQSTHLVHVKQEHVDSQPSLDSPVDFSSQIGFINAGSVRNIQASSTHNTIHHCVETLESCSQNSQHSSTVNPKNEDSHEKFGGQATSNLTDSVRAVHGNLSCSSNSLERYNRQKGPRIAKVVRRINCNVELLDFGIVLSGKSWCNSRAIFPKGFRSRVKYINVLDPTSMCYYVSEILDAGRVGPLFMVSLEHCLSEVFAHISAVRCWELVRERVNQEIAKQHKLGRKNLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRNRVCNEYWDSRPYSRPQGQIPQASHSQPNEDGGNSERNVVGVLKNEAMPAVDGAALKALFKKASPEELKSLYSILSDNSPATDRTLIASLLNQEIRSRTR 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03418 1257 SMART cupin_9 359 522 IPR003347 -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 753 782 - -
Bva04g03418 1257 Gene3D Cupin 132 506 - -
Bva04g03418 1257 ProSiteProfiles FYR domain FYRN motif profile. 1018 1076 IPR003888 GO:0005634
Bva04g03418 1257 MobiDBLite consensus disorder prediction 835 861 - -
Bva04g03418 1257 SUPERFAMILY Clavaminate synthase-like 353 549 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 28 69 - -
Bva04g03418 1257 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Bva04g03418 1257 SMART fyrn_3 1032 1076 IPR003888 GO:0005634
Bva04g03418 1257 Pfam F/Y-rich N-terminus 1026 1073 IPR003888 GO:0005634
Bva04g03418 1257 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Bva04g03418 1257 PANTHER JUMONJI 14-RELATED 70 783 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 958 978 - -
Bva04g03418 1257 ProSiteProfiles FYR domain FYRC motif profile. 1078 1168 IPR003889 GO:0005634
Bva04g03418 1257 PANTHER JUMONJI 14-RELATED 993 1254 - -
Bva04g03418 1257 SMART JmjN_1 146 187 IPR003349 -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 1172 1191 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 759 776 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 1170 1194 - -
Bva04g03418 1257 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Bva04g03418 1257 Gene3D - 1022 1162 - -
Bva04g03418 1257 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Bva04g03418 1257 PANTHER LYSINE-SPECIFIC DEMETHYLASE 993 1254 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 835 857 - -
Bva04g03418 1257 MobiDBLite consensus disorder prediction 44 67 - -
Bva04g03418 1257 Pfam F/Y rich C-terminus 1080 1164 IPR003889 GO:0005634
Bva04g03418 1257 PANTHER LYSINE-SPECIFIC DEMETHYLASE 70 783 - -
Bva04g03418 1257 SMART fyrc_3 1082 1176 IPR003889 GO:0005634
Bva04g03418 1257 Pfam jmjN domain 148 181 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03418 Bva-Chr4 27165261 27173955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03418 1 1255 JUMONJI Transcription Factor Family AT1G08620 54.314 0.0 1243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva04g03418 JmjC 3.9e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03418 - - gmx:100800271 1835.46