Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03412 atggggAGGACTCCTTGCTGTGAGAAGATGGGAATGAAGAAGGGAACTTGGACTACCGAAGAAGATCAAAtcttgatttctcatattcaAAGATATGGCCATGGAAACTGGCGTGCGCTACCAAAACAAGCCGGTCTGTTAAGGTGCGGTAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATGTTAAACGAGGCAAATTCagcaaggaagaagaagacacCATTCTCAAGCTACATCAAATTCTAGGAAACAGATGGTCTGCTATTGCGGCGAGATTACCAGGACGAACagataatgaaataaagaatttttggAATAGCCACTTGAAAAAGAGGCTTGAAATAAAGGAAGTAGGCATTGTTAAAAACCCCTTCGCAGATCCCTTGCAACAGCAACAGGGTCAAGTATCTTATAGTTCTGATGCTCTGGATCTGATGGCTATGCCCATGGCACGGGTGGATGTAACAAGTGCTGCTTCTATTGTCAATGGGAATGCTAATGATGGTTTGAGGTATCCAGCTATTGCAGATCAAGGATTTCAATGTGCAGCTGCAGTGTCCTCTCATGTCTCGGGGGAAACCATGGCTACACATAGTTACAGTAAATTCAGTGGAGAAATGCAATTTTGGTACAATCTATTCATGAAAGCAGGACAGGACAGCCATCACAAGGACATGGAGAGCTA 695 0.4029 MGRTPCCEKMGMKKGTWTTEEDQILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGKFSKEEEDTILKLHQILGNRWSAIAARLPGRTDNEIKNFWNSHLKKRLEIKEVGIVKNPFADPLQQQQGQVSYSSDALDLMAMPMARVDVTSAASIVNGNANDGLRYPAIADQGFQCAAAVSSHVSGETMATHSYSKFSGEMQFWYNLFMKAGQDSHHKDMES 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03412 231 CDD SANT 69 112 IPR001005 -
Bva04g03412 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva04g03412 231 CDD SANT 16 61 IPR001005 -
Bva04g03412 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Bva04g03412 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva04g03412 231 PANTHER MYB TRANSCRIPTION FACTOR 1 224 - -
Bva04g03412 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva04g03412 231 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva04g03412 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva04g03412 231 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Bva04g03412 231 Gene3D - 69 116 - -
Bva04g03412 231 Gene3D - 13 66 - -
Bva04g03412 231 SMART sant 13 63 IPR001005 -
Bva04g03412 231 SMART sant 66 114 IPR001005 -
Bva04g03412 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03412 Bva-Chr4 27134025 27135421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03412 1 217 MYB Transcription Factor Family AT2G31180 47.083 1.07e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g03412 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03412 K09422 - gmx:778176 260.381