Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03404 ATGGCCATTGCTGCAGAGACCAAGGCCAAGAAACCAGCCGCACCGAAGAAGCCCAAGGCGGCCTCGCCATCGCACCCTCCTTTCATTGAGATGATAACGGATGCGATTGTGACTTTGAAAGAGAGGACCGGTTCGAGCCAGCATGCTATCACCAAATTTATTGAAGAGAGGCATAAGCAGCTTCCACCCAATTTCAGGAAGCTTTTGCTTCATTATCTGAAAAAATCGGTCGGTGCTGGTAAGCTTGTTAAGGTCAAGAATTCTTTCAAGCTTCCACCAAATCGGTCGGCTCCAGTCAAGGCATCCGCTCCTTCTGCTACCAAGAAGCCTGCAAAAATTGTGGCTAAGGCTGCATCCAAGTCGAAAGCAGCTGTTAAGCCTAAAGCTGTCGCCGCAAAGAAAACCACCGCCTCAAGCGCCAAAGCAACCGCAAAATCTAAGGAGGCGGTGAAACCGAAAGCAAAAGCAACAACGAAGTCAGCTAGGACATCGGTGAAGGCTTCACCGGGGAAGAAGAGAGTTGTCAAGACAGCAAAGAAGGTGCCGGTAAAGGGCGTGAAGAAGCCCAAGAGTGTCAGATCGCCGGTGAAAAATGCCCCGGCAAAGAAGGCTAAGAAGTG 620 0.5048 MAIAAETKAKKPAAPKKPKAASPSHPPFIEMITDAIVTLKERTGSSQHAITKFIEERHKQLPPNFRKLLLHYLKKSVGAGKLVKVKNSFKLPPNRSAPVKASAPSATKKPAKIVAKAASKSKAAVKPKAVAAKKTTASSAKATAKSKEAVKPKAKATTKSARTSVKASPGKKRVVKTAKKVPVKGVKKPKSVRSPVKNAPAKKAKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03404 206 PRINTS Histone H5 signature 38 55 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g03404 206 PRINTS Histone H5 signature 115 129 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g03404 206 PRINTS Histone H5 signature 147 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g03404 206 PRINTS Histone H5 signature 11 32 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g03404 206 PANTHER HISTONE H1-LIKE 6 206 - -
Bva04g03404 206 CDD H15 22 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g03404 206 SUPERFAMILY "Winged helix" DNA-binding domain 22 102 IPR036390 -
Bva04g03404 206 SMART h15plus2 22 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g03404 206 MobiDBLite consensus disorder prediction 94 206 - -
Bva04g03404 206 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 24 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g03404 206 Pfam linker histone H1 and H5 family 25 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g03404 206 MobiDBLite consensus disorder prediction 172 191 - -
Bva04g03404 206 PANTHER HISTONE H1 6 206 - -
Bva04g03404 206 MobiDBLite consensus disorder prediction 1 28 - -
Bva04g03404 206 Gene3D - 19 98 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03404 Bva-Chr4 27096450 27097277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03404 18 92 Single Myb Histone (SMH) Gene Family AT1G72740 34.667 1.40e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03404 K11275 - zju:107425932 138.658