Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03395 ATGGCGCCGGATCAAAGAGTTGTAAAAGCCTTTAAAGCTATGAAGGCCCTGGGAATTTCTCATGAAGAGGTGAAGCCAGTGTTGAAAGAGCTGTTAAGAGTGTATGACAAAAACTGGGAACCTATTGAAGAAGACAATTACCGGACGCTTATAGATGCATACTTTGAATTTAAGGAAGATGAGCGAGCAGAACGGGAGAGAAAAGCTCCCGTCAGCCATGATGGTGGACGAAGAGCAACACTGAAACTGAACTTGGCAGATGAAGATGATCAGATTTCGTTAACCATGGATAACTCAAGCGACGATATAAAAATGCCTCTAGAAGTTCCTGTACATGAAGTCATTGAGCCTTCTAGAACTTCCATGAGAAATATGAAGCCTGGAACTAATCCTCATGAATCCCATACAATGTTGAGTGAGGTGAAAATGACATCAAATTCACTCCGCATGGCAGTTGGGGATACAAAATCATCTTCTGAAGGGCTTTATGAAGAGCCAATTTGTGAACCTAGGCATGCTTatatccaaagaaaaaatatgcataGCGATCATTGTAAGAAAGAGATAGTTAAGTCAAAAACTGAGAATTTGCCACAGCAAGGTGTTGCTCAATGTCAAATGGaatgctttcattttcttaatgaCATAACAAAAGGTTCGGAAAGGGTGAAAATATCATTGATAGATGAAATTGGCAATGAGGACTTGCCAAAGTTTAATTACATTccacataatataatataccaAAGTGCTAATGTAAATATTTCACTGGCTCGGATTGTGGATGAGGATTGCTGTTCAGATTGTTCAGGTGACTGTCTTTCATTATCGTTACCCTGTGCATGTTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTCCGCGAGGTTTATTGAAAGAAGAATTTCTAAGGACTTGTATGTTGGATCCTTTGGCTCATCGTTATGTGTACTGTCATGATTGTCCATTGGAGAGGTCTAAGAATGAGTATAAGCCAGAAGCATGCAAGGGACATCCAGTTAGGAAGTTCATAAAGGAATGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAGGATGCAAATTACAGGTGTTCTTGACTCGTGAAGGAAAGGGCTGGGGCCTTAGAACTCTTGAAGATTTGCCAATGGGATCCTTTATATGTGAATATGTTGGGGAAATATTAACCAACATGGAGTTATATGAAAGGATTATGAACAGTGGGAGCGATGAAAGGCATACATACCCCGTAACTCTTGATGCAGACTGGGGCTCGGAAAGAGTATTAAAGGATGAGGAGGCACTATGTCTAGATGCGACATATAATGGAAACGTTGCAAGATTTATCAATCATAGATGCTCTGATGCAAATCTGATAGACATTCCAGTTGAAGTGGAGACTCCTGATCGCCACTATTATCACCTTGCCTTCTTTACTACAACGGAAGTGAGTGCTTATGAGGAGCTGACATGGGATTatggtattgattttgatgatcaTGACCATCCTATTCAAGCCTTTCAATGTCGTTGTGGAAGTCCATCATGCCGTGATAAGAAACGAAAAGGAAAAAAGACAACGGGGAAGCGGGTTAGAGAATTATCTAAACCCATTGAGGCCACCGAAGTGGATCCCCACAGCACTACCGTTGGCACTACTGGAGCGAAACCATATTCTTG 1703 0.3987 MAPDQRVVKAFKAMKALGISHEEVKPVLKELLRVYDKNWEPIEEDNYRTLIDAYFEFKEDERAERERKAPVSHDGGRRATLKLNLADEDDQISLTMDNSSDDIKMPLEVPVHEVIEPSRTSMRNMKPGTNPHESHTMLSEVKMTSNSLRMAVGDTKSSSEGLYEEPICEPRHAYIQRKNMHSDHCKKEIVKSKTENLPQQGVAQCQMECFHFLNDITKGSERVKISLIDEIGNEDLPKFNYIPHNIIYQSANVNISLARIVDEDCCSDCSGDCLSLSLPCACSQETGGEFAYTPRGLLKEEFLRTCMLDPLAHRYVYCHDCPLERSKNEYKPEACKGHPVRKFIKECWRKCGCDMQCGNRVVQRGLGCKLQVFLTREGKGWGLRTLEDLPMGSFICEYVGEILTNMELYERIMNSGSDERHTYPVTLDADWGSERVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLAFFTTTEVSAYEELTWDYGIDFDDHDHPIQAFQCRCGSPSCRDKKRKGKKTTGKRVRELSKPIEATEVDPHSTTVGTTGAKPYS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03395 567 ProSiteProfiles Pre-SET domain profile. 265 365 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g03395 567 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 198 538 - -
Bva04g03395 567 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 186 - -
Bva04g03395 567 Gene3D SET domain 216 527 IPR046341 -
Bva04g03395 567 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 563 IPR025776 -
Bva04g03395 567 MobiDBLite consensus disorder prediction 523 567 - -
Bva04g03395 567 Gene3D - 1 60 IPR043017 -
Bva04g03395 567 CDD SET_SETDB-like 237 502 - -
Bva04g03395 567 MobiDBLite consensus disorder prediction 553 567 - -
Bva04g03395 567 Pfam SET domain 380 502 IPR001214 GO:0005515
Bva04g03395 567 ProSiteProfiles Post-SET domain profile. 513 529 IPR003616 -
Bva04g03395 567 SUPERFAMILY SET domain 223 525 IPR046341 -
Bva04g03395 567 SMART set_7 368 508 IPR001214 GO:0005515
Bva04g03395 567 Pfam Ubiquitin-binding WIYLD domain 4 59 IPR018848 GO:0018024
Bva04g03395 567 Pfam Pre-SET motif 216 360 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g03395 567 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 198 538 - -
Bva04g03395 567 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 186 - -
Bva04g03395 567 SMART preset_2 213 352 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g03395 567 ProSiteProfiles SET domain profile. 368 502 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03395 Bva-Chr4 27064506 27070049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03395 204 525 C2H2 Transcription Factor Family AT2G23740 29.526 3.56e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva04g03395 Pre-SET 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03395 - - mesc:110620731 600.127