Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03392 ATGTGCAATCAAGAGATGGATGGAAAAACTGAGGAAGTGGAAGATGTCGAGAGTGTTTCTGATGGTTCTTTAATTGATGATTCAGAAGATGATGGATCTCTAACTTCTGAAATAGATGACAGACTGCGCCTTGAGGAGAGTTTGACTGAGGAAGAAATAGAAGACCTGATTGCTGAGTTGATAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTAGAGAGTGATGTTAGACAAGAGTTGGAGAAAACTCTTCAAGGGGATGATTTGGAAACTGCTATTGCAGAGGAGATGACTACTTTTAAAGAGGAATGGGAAGCTGTTCTGGATGACCTTGAAGTAGAAAGTGCTAACTTACTGGAACAACTTGATGGGGCTTGTATAGAGCTACCTAGTCTTTATAAGTGGATTGAAAGACAAGCTCCCAATGGTTGTTGCACTGAAGCTTGGAAAAAAAGGAACCATTGGGTAGGGTCTCAGGAAACTGCTGAACTTGCTGAATCAAAAGTTGACGCTGAGAAGTTTCTGGAAGTCCACAGACCTGTAAGAAGGCACCATGGTAAACTACTGGAACAGGGTGCCAGTGGCTTTCTAcaaaaaaagcattttgatTCTACCACAGAGCCTGTAAAGGAAGAAGCTGAGGTAGATTGGGGAATGTTCGATAAAATATCTGCTGATGGGGGTGATACTGATACTTCATTTGGCAGTAAGCATTGGGCTTCTGTTTATTTGGCGAGCACTCCACAACAAGCTGCACTTCTGGGACTTGAATTTCCTGGAGTGAACGAGGTGGAGGAGATTGATGATGTTGATGGCATTTCTACTGATCCGTTACTAGATCTTTCTgaggaacaaaagaaaaaattcaaaaaggtaaaagaagaagatgatgtgGAAGTTTATCGGAAGCTTCAAATCCGCTTGAAATGTAGGAGacatgaaaaaaagaataaacagGCTTCATACCTGAGTGCAACAAATGATAATATTGAAGGTTTTGACACCGATGATATTCTTGATGAAGAGAAGGCTACGAGTACTGGTGCTTTGCCAGAATCTTCCAAGCCTCCAGTGTCTGATATTATTGAAAACAGAGGCATGAAACGCCTCAATGATAATGATGGTGATGAAATAGATAGTACGAATAAAAAATGCCGAACTGCTACTGTTGATGGTGATGATGAAGCCAATGTCAATGAAGACAAGTCAATTCTCAGTATGAAATTGTTAGAGGATCAATCCAAGTTAAAAGATGGTATGAGCACTGGCGATATTAATTGTCTTCCTCCTGAGTGTCTGGATGAGAAGTTTCACTGCACAGCTTGTGATAAAGTGGTTCTTGAAGTGCACCCTCACCCTCTTTTGAAAGTGATTATTTGTGGGGATTGCAAATGCTTGGTGGAAGAAAAGATACATGTGAAGGATCTGGACCCTGATTGTTCTGAGTGTTACTGTGCATGGTGTGGAGGAAACACAGAATTAGTTAGTTGTAAATCATGCAAAACATTATTCTGCACCAACTGTGTAAGGAAGAATCTTGGTGTGGAATGCCTCTCTGAGATTCATGCTACTGGCTGGCATTGTTGTTGCTGCCGCCCAGATCTTCTGCAAAGATTGTCATCAAAGCTGGAGAAAGCTATGGCATCTGCTGGTATcttagtttccggctctagtAGTGATTCTGATAGTTCAGATTCAGAGGTTAATGTTACAATCAGtgcTAAGCGAAAATGCAAAAAGACAATTAGGAGGATTCTTGATGATGCTGAATTAGGAGAAGaaaccaaaaggaaaattgcaattgaaaagGAACGTCAAGAACGTCTGGAGTCTTTGAGAGTGCAATTTTCTGCCTCATCTAACGTGAAGAGCTCTGCTGGTTATCATGGGAATTTATCTGAAGGTTCCGGTATCGAAGTCCTTGGTGACGCACTAACTGGTTACATAGTAAATGTCGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAAACCCATCAGATTGCAGGAATAAGATTTATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAGGGTCTTGGTTGTATTCTAGCTCATACAATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACTCAGCAATGAGAAGTGTTGATTTGGGGTTAAGGACTGCACTGATAGTGACACCTGTCAATGTACTGCACAACTGGAGGCAGGAGTTCATCAAATGGAGACCTTCAGAATTAAAGCCGCTTAGAGTCTATATGCTTGATGATGTACCAAGGGACAGGAGGGCAAAGTTACTTGCAAAGTGGAGAGCCAAAGGCGGCATCTTTTTGATTGGTTATACTGCTTTTCGAAATTTATCTTTTGGCAAGCATGTGAAAGACCGGGACGTTGCCAGAGATATTTGTCATGCTTTGCAGGATGGGCCAGACATATTTGTTTGTGATGAAGCCCATATGATAAAGAATACAAGGGCTGACATAACTCAATCATTGAAACAAGTAAAATGCCAAAGAAGAATTGCATTGACTGGATCACCCCTTCAGAACAACCTCATGGAATATTATTGTATGGTTGACTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAACCCCATAGAGAATGGTCAACATACTAATTCAACTCTGAATGATGTAAAGATTATGAACCAGAGGTCTCATATTCTGTATGAACAGTTGAAAGGTTTTGTCCAAAGAATGGATATGAGTGTGGTGAAGAAAGATTTGCCACCAAAAACTGTCTTTGTGATAGCTGTCAAACTTTCTCCCCTTCAGAGAAAATTGTACAAGAGATTCCTGGATGTGCATGGATTTAATGATGAGAAAAGttctaatgaaaaaataagaaagagaagcTTTTTTGCTGGATACCAAGCATTAGCTCAGATATGGAACCACCCCGGAATCTTGCAACtgacaaaagaagagaaggactATGTGAAACATGAAGATGCTGTTGAGAATTTTCTCGTGGACGACAGCTCCAGTGACGAAAATTCAGATTACAATGTGCTCATTGGAGagaaaatgaaacacGCAAATGATTTTATGCAAGGGAAAGATGATAATGGCTATTTCTTAAAGGGTTGGTGGAATGATCTTCTTCATGAAAAAAACTACAAGGAGCTTGATTACAGTGGCAAAATGGTTTTGCTGCTAGATATATTAACCATGAGTTCTGATGTGGGTGATAAAGTGTTAGTTTTTAGCCAGAGCATACCAACCCTGGATCTTATAGAACTTTATCTATCAAGGTTACCTCAACGTGGCAAACAAGGCAAATGctggaaaaagggaaaagattGGTATAGGCTGGATGGAAGGACGGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGGTTTAATGAACCCTTGAATAAGAGGGTAAAATGTACTTTGATTTCAACCAGAGCTGGCTCTTTGGGTATTAATCTTCATGCGGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCGACCTATGATCTCCAGGCAATCTATCGAGCTTGGAGGTACGGCCAGAAAAAGCCCGTGTTTGCTTATCGATTGCTGGCACATGGAACTatggaagagaaaatatataagcgGCAGGTAACAAAGGAGGGGCTCGCTGCTAGAGTGGTTGATAGACAGCAGGTTTGTAGGACAGTATCCAAAGAAGAAATGTTGCATCTGTTTGAGTTCGGTGATGATGAGAACCCCGAGACTTTGACTGAATTGAGTGACGAGAACGGACATACCTTTGAGCAAAATAAACCACTTTTAGTTGGGCACTCACTCAAACATACGGTACCACATTCTAATGGAAGCAGCTATTCTGATAAGTTAATGGAAGGCTTAATTAGCAAGCATCATCCACGGTGGATTGCTAATTACCATGAACATGAAACCCTTTTACAAGAGAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATATCAGAAAACGCTGGAATGGGAGGAAGTGCAGAGAATACCACTTTGTGAATCTGTGCCTAATCAAAAGCCAGAAACACCAAATGCGCCACCCCCCGTATTAGAAATCCGCAGCGTATCACCAACTAGAGTGAGGAATCGTTTCGTGATTCGGAAATGCACCAATCTTTCACACTTGCTGACACTTCGAAGTCAGGGCACAAAATTTGGATGCACTACTGTATGTGGGGAATGCGCCCAGGAGATTAGATGGGAAGATTTGAAAAGTAGAGATTGGAGAATAGCGAATTG 4355 0.3945 MCNQEMDGKTEEVEDVESVSDGSLIDDSEDDGSLTSEIDDRLRLEESLTEEEIEDLIAELIEVESKAAEAQEALEEESLAKVESDVRQELEKTLQGDDLETAIAEEMTTFKEEWEAVLDDLEVESANLLEQLDGACIELPSLYKWIERQAPNGCCTEAWKKRNHWVGSQETAELAESKVDAEKFLEVHRPVRRHHGKLLEQGASGFLQKKHFDSTTEPVKEEAEVDWGMFDKISADGGDTDTSFGSKHWASVYLASTPQQAALLGLEFPGVNEVEEIDDVDGISTDPLLDLSEEQKKKFKKVKEEDDVEVYRKLQIRLKCRRHEKKNKQASYLSATNDNIEGFDTDDILDEEKATSTGALPESSKPPVSDIIENRGMKRLNDNDGDEIDSTNKKCRTATVDGDDEANVNEDKSILSMKLLEDQSKLKDGMSTGDINCLPPECLDEKFHCTACDKVVLEVHPHPLLKVIICGDCKCLVEEKIHVKDLDPDCSECYCAWCGGNTELVSCKSCKTLFCTNCVRKNLGVECLSEIHATGWHCCCCRPDLLQRLSSKLEKAMASAGILVSGSSSDSDSSDSEVNVTISAKRKCKKTIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNVKSSAGYHGNLSEGSGIEVLGDALTGYIVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYSAMRSVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVYMLDDVPRDRRAKLLAKWRAKGGIFLIGYTAFRNLSFGKHVKDRDVARDICHALQDGPDIFVCDEAHMIKNTRADITQSLKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLNDVKIMNQRSHILYEQLKGFVQRMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDVHGFNDEKSSNEKIRKRSFFAGYQALAQIWNHPGILQLTKEEKDYVKHEDAVENFLVDDSSSDENSDYNVLIGEKMKHANDFMQGKDDNGYFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPQRGKQGKCWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVCRTVSKEEMLHLFEFGDDENPETLTELSDENGHTFEQNKPLLVGHSLKHTVPHSNGSSYSDKLMEGLISKHHPRWIANYHEHETLLQENEEEKLSKEEQDMAWEVYQKTLEWEEVQRIPLCESVPNQKPETPNAPPPVLEIRSVSPTRVRNRFVIRKCTNLSHLLTLRSQGTKFGCTTVCGECAQEIRWEDLKSRDWRIAN 1451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03392 1451 PANTHER RAD54-LIKE 26 1447 IPR044574 GO:0016887
Bva04g03392 1451 MobiDBLite consensus disorder prediction 1 47 - -
Bva04g03392 1451 PANTHER RAD54-LIKE 26 1447 - -
Bva04g03392 1451 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 703 886 IPR014001 -
Bva04g03392 1451 SMART ultradead3 677 898 IPR014001 -
Bva04g03392 1451 Coils Coil 1329 1349 - -
Bva04g03392 1451 Gene3D - 655 935 IPR038718 -
Bva04g03392 1451 Coils Coil 46 80 - -
Bva04g03392 1451 CDD ADDz_ATRX 445 543 - -
Bva04g03392 1451 Pfam SNF2-related domain 703 1005 IPR000330 GO:0005524|GO:0140658
Bva04g03392 1451 MobiDBLite consensus disorder prediction 17 34 - -
Bva04g03392 1451 ProSiteProfiles ADD domain profile. 437 569 IPR025766 -
Bva04g03392 1451 MobiDBLite consensus disorder prediction 355 388 - -
Bva04g03392 1451 Coils Coil 111 138 - -
Bva04g03392 1451 SMART helicmild6 1113 1210 IPR001650 -
Bva04g03392 1451 Gene3D - 946 1289 IPR027417 -
Bva04g03392 1451 Pfam Helicase conserved C-terminal domain 1086 1210 IPR001650 -
Bva04g03392 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 941 1280 IPR027417 -
Bva04g03392 1451 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1090 1259 IPR001650 -
Bva04g03392 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 935 IPR027417 -
Bva04g03392 1451 CDD SF2_C_SNF 1078 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03392 Bva-Chr4 27039992 27055603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03392 711 1263 RAD5 or RAD16-like Gene Family AT5G43530 25.000 3.48e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva04g03392 SNF2_N 2.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03392 K10779 - gmx:100794911 2138.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03392 04 27039992 27055603 Bva04g03392 04 27039992 27055603 ECH