Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03386 ATGTCGAGGCAGCAGGTCAAAGTAAAGAGGGAGACGCTAGAAGCATGCACGACATGCCCTCTTTGTCATAAGCTCTTCAAGGATGCCACTACCATGTCTCTCTGCCTTCGTAACTTTTGCAGGAAGTGCATATACGAGAAACTATCAGATGATGAGACGGACTCTTGTCCTGTATGCAATATTGATCTAGGCTGTGTTCCTGTGGATAGGAGGACCCGAGAGTGTGCCACTGAAGTTGCACGCAAAGCTATTAATTCTCTAGAAGGTGCTCGTGTATTTGCAGTTGAATTGTTCTTGGCAAAGGATGGGCAGattttattaaatgaagtaGCACCTAGCGCCTTAACAGATTTTTTGACAGGGAGAGGTTG 371 0.4474 MSRQQVKVKRETLEACTTCPLCHKLFKDATTMSLCLRNFCRKCIYEKLSDDETDSCPVCNIDLGCVPVDRRTRECATEVARKAINSLEGARVFAVELFLAKDGQILLNEVAPSALTDFLTGRG 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03386 123 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Bva04g03386 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 60 IPR013083 -
Bva04g03386 123 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 66 113 - -
Bva04g03386 123 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 70 IPR044807 GO:0004842
Bva04g03386 123 Pfam ATP-grasp domain 58 112 IPR003135 -
Bva04g03386 123 Gene3D - 72 112 - -
Bva04g03386 123 SUPERFAMILY RING/U-box 13 63 - -
Bva04g03386 123 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 1 70 - -
Bva04g03386 123 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Bva04g03386 123 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03386 Bva-Chr4 27006425 27008418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03386 6 70 C3H Transcription Factor Family AT2G30580 66.154 1.27e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03386 K16277 - mnt:21389216 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03447 13 23530117 23535478 Bva04g03386 04 27006425 27008418 ECH
Bva04g02825 04 24247344 24253110 Bva04g03386 04 27006425 27008418 ECH
Bva13g02748 13 20134139 20140684 Bva04g03386 04 27006425 27008418 ECH
Bva04g03386 04 27006425 27008418 Bva04g03386 04 27006425 27008418 ECH