Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03385 ATGAGATCGAGCAGCGTAGTGGAGGCAGAGAGGGATAAGTACAGtatgataaattttgaagaaactgAACTGCGACTGGGCTGGCCTCGTCCTTCTGCAAATGTCGACTCCGATTCTGTCTTCAACAACACTGGTACTGCCCATGCTAAGAGAGGTTTCTCCGAGACCACCACTAGTGCCGCTGCTTCAGTTGATTTGAAGCTCAATCTTTCCTCTGCTAGTGACTTGACAACCTCTTCTTCGGCACATCCTCAAGACACCGCCGCAACTGCAACTGCAACTGCTACTGCTACTGCTCCTCAAGCTAACGACCCAGCAAAGCCACCAGCTGCAAAGGCACAAGTGGTAGGTTGGCCACCAGTCCGATCATTCAGAAAGAATATAGTGTCGGCACAAAAGAACAATAACAGAAGTGAGAAAGGCAGCAAGAGCAAGAGTAGTAGTGTGGCTTTCGTTAAGGTTAGCATGGATGGTGCACCGTATCTACGCAAGGTGGACCTCAAGTTATACAAGAGCTACCAAGAACTGTCCGATGGGCTTGCTAAAATGTTCAGCTCTTTCACCATTAATGCCAAGTGTGGGTCGGATTTCTTGAACGAGAGAAAGCTGATAGATCTTTTGAATGGTTCCGACTACGTACCAACTTACCAAGACAAGGATGGAGACTGGATGCTCGTAGGCGACGTGCCGTGGGAGATGTTCGTCGAATCATGCCAGCGCTTGCGCATAATGAAAGGATCCGAGGCAATTGGACTTGCACCGAGAGCGGTGGAAAAGTGTAAGAACAGAAGCTG 794 0.4811 MRSSSVVEAERDKYSMINFEETELRLGWPRPSANVDSDSVFNNTGTAHAKRGFSETTTSAAASVDLKLNLSSASDLTTSSSAHPQDTAATATATATATAPQANDPAKPPAAKAQVVGWPPVRSFRKNIVSAQKNNNRSEKGSKSKSSSVAFVKVSMDGAPYLRKVDLKLYKSYQELSDGLAKMFSSFTINAKCGSDFLNERKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCQRLRIMKGSEAIGLAPRAVEKCKNRS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03385 264 Pfam AUX/IAA family 21 255 IPR033389 -
Bva04g03385 264 PANTHER AUXIN-INDUCED PROTEIN AUX28 14 257 - -
Bva04g03385 264 MobiDBLite consensus disorder prediction 75 116 - -
Bva04g03385 264 ProSiteProfiles PB1 domain profile. 149 246 IPR000270 GO:0005515
Bva04g03385 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 257 IPR003311 GO:0005634|GO:0006355
Bva04g03385 264 Gene3D - 143 258 - -
Bva04g03385 264 MobiDBLite consensus disorder prediction 75 101 - -
Bva04g03385 264 SUPERFAMILY CAD & PB1 domains 142 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03385 Bva-Chr4 27002694 27005725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03385 139 254 B3 DNA Binding Superfamily AT4G23980 33.621 4.93e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva04g03385 AUX_IAA 1.6e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03385 K14484 - jre:108995220 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03443 13 23520452 23520748 Bva04g03385 04 27002694 27005725 ECH
Bva04g02833 04 24283820 24286074 Bva04g03385 04 27002694 27005725 ECH
Bva04g03385 04 27002694 27005725 Bva04g03385 04 27002694 27005725 ECH