Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03369 ATGGCCGTCGGGAAGAATAAAAGGATTTCGAAGGGAAAGAAGGGAGGCAAGAAGAAGGCTGCCGATCCCTTTGCTAAGAAGGATTGGTATGACATCAAGGCGCCTTCCATGTTCAACCAAAGGCAGATCGGAAAGACTTTAGTCACCAGAACTCAAGGCACTAAGATTGCATCTGAAGGACTTAAACATAGAGTCTTTGACATCTCCCTAGCGGATCTTCAGAAGGATGAGGACCACGCCTTCAGGAAGATACGTTTAAGAGCAGAGGACGTGCAAGGAAGGAATGTACTTACAAACTTCTGGGGAATGGACTTCACCACAGATAAGCTAAGGTCTTTGGTTCGCAAGTGGCAAACACTGATTGAGGCCCATGTTGATGTCAAAACTACTGACAATTACACTTTGAGGATGTTCTGCATTGCATTTACAAAAAGACGTGCAAACCAGGTCAAACGAACCTGTTATGCTCAAACAAGTCAGATTCGCCAGATTCGCCGGAAGATGAGGGAAATTATGATAAACCAGGCTGCTTCTTGTGATCTGAAGGAATTGGTTGTTAAGTTTATTCCTGAGATGATTGGAAGGGAAATTGAAAAGGCGACTTCTAGCATCTACCCACTACAAAATGTTTTCATTCGAAAAGTCAAGATCCTGAAATCCCCAAAGTTTGACCTTGGCAAGTTGATGGAGGTTCATGGTGATTATTCGGAGGATATTGGTACAAAGTTAGAGAGACCTGCTGACGAAACTGTGGAGGGTGAGACTGAAATTGTTGGAGCTTA 782 0.4373 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSMFNQRQIGKTLVTRTQGTKIASEGLKHRVFDISLADLQKDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKRRANQVKRTCYAQTSQIRQIRRKMREIMINQAASCDLKELVVKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDIGTKLERPADETVEGETEIVGA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03369 260 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Bva04g03369 260 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Bva04g03369 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Bva04g03369 260 MobiDBLite consensus disorder prediction 1 15 - -
Bva04g03369 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Bva04g03369 260 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g03369 260 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03369 Bva-Chr4 26923039 26925356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03369 1 260 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 84.733 1.06e-161 447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03419 13 23416668 23419129 Bva04g03369 04 26923039 26925356 ECH
Bva04g03369 04 26923039 26925356 Bva04g03369 04 26923039 26925356 ECH