Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03349 ATGGGTTGTGTAATCAGTCGGGAAGTGTCATCGGGCATAATCTCTGAGGTGAGAGAGGAGCGTGTTGAATCTAATAGGAAAATAGATGAAGTATCGGCGAAGAATGCTGATGGGAATGTGGTAGAGGTTCAGAACGGTGGGAACcagaaggaagagaagaagggTGGTGATAATGGGGTTCAGCGGCCACGGGGTGAAAGAAGAAGGTCAAAGCCTAACCCAAGACTGAGTAATCCGCCCAAACATTTGCCGGGGGAGCAAGTAGCGGCTGGATGGCCGCCATGGCTCACGGCGGTGTGTGGAGAAGCACTCAATGGGTGGATTCCACGAAAAGCTGAcacatttgaaaaaattgataagATTGGGCAAGGAACATATAGCAATGTGTACAAAGCTAAAGACATGTTGACCGGTAAAATAGTTGCGCTAAAGAAGGTCAGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGAAGACTGGATCATCCCAATGTCGTAAAGTTGCAAGGTCTAGTTACATCAAGGATGTCCTGTAGTCTGTATCTGGTGTTTGATTACATGGAACATGATCTTGCCGGACTTGCTGCAAGCCCAAGAATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAGCTTCTATCTGGACTTGAGCATTGTCATGACCGTCACATACTTCACCGTGACATTAAAGGGTCAAATCTTCTTATTGACAATGGAGGGGTACTTAAGATTGCTGATTTTGGACTCGCCTCTTTCTTTGATCCAAATCACAAGCACCTCATGACTAGTCGTGTGGTTACCCTTTGGTATCGACCTCCCGAGTTGCTTCTTGGTGCCACTGATTATGGTGTGGGCGTGGACCTCTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTAGCGGGGAAGCCAATCATGCCTGGTCGTAACGAGGTAGAACAACTGCATAAGATATACAAACTGTGTGGTTCACCTTCCGATGAATACTGGAAGAAGTCAAAGCTGCCTAATGCTACCTTGTTTAAACCCCGAGAGCCCTACAAGAGATGCATAAGAGACATATTCAAAGATTTTCCACCTTCTGCATTGCCCCTTATTGATACCCTTCTTGCAATTGATCCAGCAGAACGGAAGACTGCTTCACGTGCTTTGAGAAGTGAGtttttcacCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAGTATCCACCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCTAGGAGATTAAGAGCTGCAAGCAAAGCTCAGGTTGACGGCAGAAAGAAAACCCGAACACGTGACCGTGCTGTTAAAGCTGTTCCTGCTCCTGAAGCAAATGCGGAGcttcaatataatattgacAAACGGCGTCTAATCAGTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATCAAGATGGACAACTTGGGTTTCCTTTGGGATCTTCTCATCATATTGATCCAGACATTGTTCCTCCTGATGTTCCTTTCAGTTCAACCTCATTTACCTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGCTGCCCCAATGCGGAAGAAACACATTGCAGCTGatatatcaaattcaaaaccaCAGGATAAGttcaaaggaaagaaaatcataGCTTA 1697 0.4302 MGCVISREVSSGIISEVREERVESNRKIDEVSAKNADGNVVEVQNGGNQKEEKKGGDNGVQRPRGERRRSKPNPRLSNPPKHLPGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPRIKFTEPQVKCYMHQLLSGLEHCHDRHILHRDIKGSNLLIDNGGVLKIADFGLASFFDPNHKHLMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRNEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRDIFKDFPPSALPLIDTLLAIDPAERKTASRALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRLRAASKAQVDGRKKTRTRDRAVKAVPAPEANAELQYNIDKRRLISHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDIVPPDVPFSSTSFTYSKEPFQAWSGPIAAPMRKKHIAADISNSKPQDKFKGKKIIA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03349 565 MobiDBLite consensus disorder prediction 18 33 - -
Bva04g03349 565 Gene3D Phosphorylase Kinase; domain 1 102 197 - -
Bva04g03349 565 ProSiteProfiles Protein kinase domain profile. 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03349 565 Coils Coil 14 34 - -
Bva04g03349 565 MobiDBLite consensus disorder prediction 407 454 - -
Bva04g03349 565 SMART serkin_6 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03349 565 MobiDBLite consensus disorder prediction 47 73 - -
Bva04g03349 565 MobiDBLite consensus disorder prediction 546 565 - -
Bva04g03349 565 CDD STKc_CDK9_like 115 399 - -
Bva04g03349 565 Pfam Protein kinase domain 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03349 565 SUPERFAMILY Protein kinase-like (PK-like) 109 406 IPR011009 -
Bva04g03349 565 MobiDBLite consensus disorder prediction 417 454 - -
Bva04g03349 565 PANTHER CELL DIVISION PROTEIN KINASE 48 545 - -
Bva04g03349 565 Gene3D Transferase(Phosphotransferase) domain 1 198 439 - -
Bva04g03349 565 PANTHER OS01G0367700 PROTEIN 48 545 - -
Bva04g03349 565 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Bva04g03349 565 MobiDBLite consensus disorder prediction 18 88 - -
Bva04g03349 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03349 Bva-Chr4 26801792 26806481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03349 107 439 Core Cell Cycle Gene Families AT5G10270 51.576 2.64e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Bva04g03349 Pkinase 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03349 K08819 - gmx:100786837 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03349 04 26801792 26806481 Bva04g03349 04 26801792 26806481 ECH
Bva13g03393 13 23273883 23278682 Bva04g03349 04 26801792 26806481 ECH