Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03329 ATGAATCCACTTAGATTCAATTCTGGGATTTCCCTAtgccttctccttctcctcctcctctcGCCGGAGATTCCGTCTGCCAGAGCACAACCCGGAACTAGTGCCGAAACCGACCAGTACTACAACCGGTTCAGCCCCTCCTTGGCTATCATCATCGTCATATTGGTTGCGGCTCTTTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCTGACTCGCCATCCAACAGCGTTCGACCTCTCGGCGGCGCTGCCGGCCGTTCCAGGCGCGCACCCCGTGGCCTTGACCCTGCAGTGATTGAGACGTTTCCAACTCTTGAGTACTCTGTAGTTAAGATACATAAGATTGGGAAAGGTGTACTGGAATGCGCCGTATGCTTATGCGAATTCGAGGACACCGAAAAGCTGCGTTTAATCCCAAAATGCGACCACGTCTTCCACCCGGAGTGTATCGATGAATGGTTGGCTTCTCACACCACCTGCCCCGTTTGTCGAGCTAACCTCGTTCCCCAACCCGGCGAATCTGTACACGGAATTCCGGTTCTAAACGCCGACGTAGATATCGAAGCACAAAACCAAAACGAAGCCGTTGAAACTGCACCGGAGCAACAGAATGCGGAGGTTGACCGTGAACAACCAGAGGCGGAGGCCGATCGGACGCTGAACCGAAACCGTACGCGGAGGTCTCGGTCCAGCCGGACACGAAGGTTCGCGTTTCCACGGTCACACTCGACCGGGCACTCACTGGTCCAACCGGGTGAAGACACGGAACGGTTCACTTTGAGACTGCCGCTGGAAGTGAGGAAACAATTAATAAACCAGAAATTGCAAAGGGCCACGAGCTTAGTAATCTTGCCTAGAGAAACTAGTTCGAGGCGTGGCTATCGCAACGGCGGTGAAGGTAGTAGCAGGGGCAGATTATCCCGGCAGTTTGACCGGGGTTCCAAATCAGACAAGTGGGTTTTCACGATGGCGCCGCCCTTCTTAGTGAGGGCATCATCGATTAGGTCTCCGAAGGTGGGTAACAGCGCCGGTGAAGGGACCTCCACTCAACCCATCGTGCCGCCCTCAACCGAGTCCACGCGGCCGCCGGTTTA 1103 0.5376 MNPLRFNSGISLCLLLLLLLSPEIPSARAQPGTSAETDQYYNRFSPSLAIIIVILVAALFLMGFFSIYIRHCADSPSNSVRPLGGAAGRSRRAPRGLDPAVIETFPTLEYSVVKIHKIGKGVLECAVCLCEFEDTEKLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHGIPVLNADVDIEAQNQNEAVETAPEQQNAEVDREQPEAEADRTLNRNRTRRSRSSRTRRFAFPRSHSTGHSLVQPGEDTERFTLRLPLEVRKQLINQKLQRATSLVILPRETSSRRGYRNGGEGSSRGRLSRQFDRGSKSDKWVFTMAPPFLVRASSIRSPKVGNSAGEGTSTQPIVPPSTESTRPPV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03329 367 MobiDBLite consensus disorder prediction 197 255 - -
Bva04g03329 367 PANTHER RING FINGER DOMAIN-CONTAINING 14 310 - -
Bva04g03329 367 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Bva04g03329 367 Pfam Ring finger domain 124 167 IPR001841 -
Bva04g03329 367 MobiDBLite consensus disorder prediction 292 315 - -
Bva04g03329 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 310 - -
Bva04g03329 367 SMART ring_2 125 166 IPR001841 -
Bva04g03329 367 MobiDBLite consensus disorder prediction 334 367 - -
Bva04g03329 367 MobiDBLite consensus disorder prediction 206 227 - -
Bva04g03329 367 SUPERFAMILY RING/U-box 119 174 - -
Bva04g03329 367 MobiDBLite consensus disorder prediction 338 358 - -
Bva04g03329 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 172 IPR013083 -
Bva04g03329 367 CDD RING-H2_EL5_like 124 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03329 Bva-Chr4 26706641 26707921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03329 8 362 Rapid Response to Elicitors AT3G05200 46.467 3.11e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03329 K10664 - gmx:100810865 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03329 04 26706641 26707921 Bva04g03329 04 26706641 26707921 ECH