Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03304 ATGGCAGATTCACAGTCGAATTCGAAAATTTTCAGTGTTCGGATTGTCTCCATCGACTACTACATGGCGCCGCCGATCCCTGGTCTCGATATCTGTTACAGTAGCTTCCATGgtGGAAAGGTGAACGAGGTTCCTGTAATAAGAATATATGGTTCTACTCCGGCTGGGCAGAAGACGTGTTTGCACATACATCGAGCCTTGCCCTATCTGTATGTGCCGTGTGCAGATATCCCCGCTCAACCAGACCAATCAGGTGATGCATACACCTATAAGGTATCTGCTACGCTTGAGAAAGCCTTGAAGCTTAAAGGTAGTGCTGGTTCAACAAGACAACATGTACATGGTTGCAGTCTTGTTCGCGCAAGGAAATTTTACGGATATCATTCATCAGAAGAGTTATTTGTGAAGATATACCTGTATCATCCACACGATGTTTCCCGTGCAGCAAATCTACTCTTGGGTGGTGTTGTTCTTGATAAAAGTTTGCAGCCCCACGAATCACATATACCTTTTATTCTTCAGTTTCTGGTTGACTATAACTTGTACGGCATGGGCCATGTGCACCTATCAAAGATGAAGTTCCGTCATCCCATAACATATGTTTCTTTTGATGAGGGATTCAATTGCAATAGCCAGCAGAGAGTGGCAGATCCAGGTGGTGATGTATGCTTGGGTTCATCGATGAGGATACCTTCGTCTATCCCATCTGACTGGATGTGGCAACCTCCCAGTGAATTGGGTGCTTCGTCAAATCTTGAGGCTCACTGCCCTAAACGTCAAAGCACTTGTGAACTTGAGGGAGATGCTTCTGTGGATGAGATTCTTAATCAGCAGTTTAAAATGTATACATCTCTCTCACAAACACGCTCAGATGTCAAAATGGTTCAGTCGCTTGTACCAATCTGGGAGgAGCAACTGGAAAGAATTGGAATTTTCGAGGCTAATATCTCTCCTGATCCTGGAAAACCTCTTCCTGATGAAGTTTTGAAATCTCTCTCTATGGGTCtggattttgagaaaataatttttgaattctgCAGTGAAGCAAAGACATCTTCATTCTCCACTTCTTCTGAGGAGTTAAGAGAAACAGATATAATAGGCTCAGCATCACCGCCAGATTCATTAAGTGAAGGGGGCAAATTGCGTGGGGGAGAAATTGATTCAAGTATCAAATTGTTAACTGTTAATGAAAGGGCGTCGTCTGAAATGGTTGGAACATTGGACATCAAGGCAACTGATAGAGAAGCTTTGAATCTCCTAAAGTGGCTTGCAAGTTCTCAGGCTGCAGAGGATATGAACTCTGATGATGAGCTTGTTTGCGAATCCATTTTGAGTCCATTATTACCTGCTGCAACAGTTGATCAGGTGCTGGAGAAAGCCAATGTGGATTATGAGAGTGAGTCCCTGAAAGAGTGTCAAGATATTCTAGATTCAATTGATGATGTAAATGAATTAGAGTTACCAGAGGAAAAGCCTTGTTCCTCTAATCTCAGCCATTGCATTCAGGCTTCATTAAATAATGTGATTCCCCAAGTTGATGGTTCTGGGGATGATGGATTATCAAGTCCATATGCTAGTTCTGCCCAGACATCATCTGTAATGGGGATGAAAAGTGAATCCAAATTGTCTTCTGAATTTCCATCACTGCAGAATATTGGCACAAGTACAGTTAGTAAAGATAAAGGAAATAAACTATGGGGTTCTTTGCCTTTATCCGTGAACCAGAGGGTTACCAATGAGCAACAAGTTACTTCATGCATGAAACATTCATTTCAAAGTGAACCTGGAGATTCTGTTGGTTCATCTTACCTGACCAGATATGAGACTGAGCATGGTTTTTGTAACCTGAAAAGTGAGGGTATAGGTGCTTCTGATTCTAAAGAAGCACATGCATTGGTTAACTGCTCAGTGCGGGACTTGATGAGGAGAAAGCGGTGCTACCAAGTTGAACAAGATGAATTTGATCCAGGATCAGGAATAATCAAAAAGCTTGTTTTAGACAAGGATGAAAAACAGAATGTGTGCACTTGGCAAAACCGACGGGATTTGGAAACTTGgcaaaatagagaagaaaaaagagaagttgaGGAAAATTGTGATCCTGAAGTGAGCAATCATGATTATTTACTGCATGGGAAACTGCCTCTTCATGCTGCCAATGATGGTTGTTTACAGACTTCTTTGCTGAAAGATGACCATTTTGGTCAACATGACATGGATGGTTCAGAAGCAATTCCAGTGTCAAGGAACATCACAGAAGGAGATACTTGTCAAATGAACAAAGGACTGGGCCTCCATGAGCTGAAAACTTTACATTCTGCTGATTCCATAGATCACTCTGAGGCTTTTAGTGGTAAAAAATTCAAGGTTAGCACAACTCATGCAAAACCTCTAGCTCCTGATGCCTATACACCAAAGCAAGATTCCTTTCTTGATGTTCAGTTTATGAGGACAGATGCTGAGCATGAAGTCAGAGTTCCAAAGAGGTCTCAGGAAACCCATTTTGCAGCTTCAAGTAGTGAACATAACTTTACTATTGACTTTGAAATGTCTGTTAAAGATAATTCCATTCAGAAAAGTTCTCATGGAAGTAGATCTTACATGCAACACGGTCAGGCAAAGTCCTATGAGAATGCTGTGGGTGCAATTGGTTCAAGTGACATGGAAGTGTTGCCCAgtgaaaaaaaagatgatCAAAAGCCTGgagaaattttggttttatgtGATACAGTTGGCTCGGCATCCGTAGTTGAAGACCAAGATGGGAAAGCTTTGGATGATTTTCTTCGCTTTTCTGCAAGGAATACACTTGAAGTGATGGAAACTCGAAACAATTGTTCTGCAATTGGTGGCTCTGATTCTGATGGAAAAAAGGCCTTGGGAGTCACTACTCACTATAAAAGTGACGGATCTCACTTGTACCTTTTAACACCTAAAATTTTGCCACCTTCTGTGGGGAGTGTTTGTAAATGGCTATCGTGTTGTGAGAGAGATCAGATGCATCAGAAAactgatgaagaagaaaaggctGCACCTGAATGCCCTTCCAGACCCCATGCTAGGCCTAGCTTGGATCAAGATCAAAATGTTGATGCAGAGAAGAACTCTTCATGCATCAGTGGAGGGCAGATAGGAGTTAAAAAATGCTTGGATGGCTCACAGGATATTTCTCAGATATTAGCTCCATATGAGAAATTGAAGTCCACTCCTTTGAGTCAAATTGGATTTCGAGATCCTGCAAGTGTTGGTGGTGGACAGCAATTGGCATTACTAAGTATAGAgGTTCTTGCAGAATCAAGAGGATACCTTTTACCTGATCCTCGGTTTGATCCGATCAACATTTTAGCACTTGGGTTTCAGAATGATAGTAATTCTTCCATTGAAGTTCTTGTGCTTTTGCATAGTAAACTTGAATCTCTTCAGAGGAGTTTTGATGGTTTATCAGCCTGTAAGGTGTTGGTCTTTAATGATGAAAAGgacttactaaaaaaatttataaagatagTATCTTCATCTGACCCTGATATTTTGATGGGATGGGATATTCAAGGTGGTTCTCTTGGCTTTATAGCAGAAAGGGCTTCTCATCTTGGTTTAGGATTACTTAATAGTTTATCACGCACTCCATCAGAGTCTTGGGTTGCTTCACAAGATACTGAAACTTCTGACAAAGAGATATTCGTACCTTTAACTCCCGATACATCTGGTGCTGATTGtggtgcaaaagaaaatataataattgaggATGAATGGGGACGCACTCATGCCAGTGGTGTTAATGTGGGAGGCAGAATTGTGCTTAATGTGTGGCGATTGATCCGTGGAGAAGTTAAGCTAAATTTATACTCAGTTGAGGCTGTTGCAGAATTAGTGTTGAGGCGGAAAATCCCTTCAGTTCAATATAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACAAGCAAGATATCAGTGTATCAAATATATCACAGAGAGAGCAAAGCTAAACCTTGAGATCTTAAACCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTGTTTTTGGTATCGactttttttctgttctttctcGAGGTTCACAATACCGTGTTGAATCAATGTTTCTGAGGTTGGCTCACACACAAAATTATCTTGCTATCTCCCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTACCACTTGTAATGGAACCAGAGTCAGGATTTTATTCAGACCCTGTTGTTGTATTCGACTTTCAGTCTTTATATCCATCAATGATAATTGCATATAATCTTTGCTTTTGTACGTGCCTTGGCAAAGTTTTGGCAACAAAGTCAAACACACTAGGGGTTTGTTCATACTCACCAGAGAAGCATATTCTGCAggatttaaaagataaaatcttgCTTACTCCTAATGGCGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTGTACTGCCTCGCTTATTAGAGGAAATTTTATCTACTAGAATAATGGTAAAGCAAGCAATGAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTAAAGCTCATAGCAAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGTGCAGAGCTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACGCTGGAAAAAGCTATATCGTTTGTAAATCGACAGGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACCGATAGCATGTTTGTCCTTCTTAAAGGACGGACTATTAAAGAATCGTTCCAGATAGGTAGTGAGATTGCTTCTGCCGTCACAGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATTACCCTTGTTTCCTCCTCACCAAGAAACGATATGTTGGTTATAGTTATGAAAGCCCTGGTCAATCTGAACCGGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACTTGTGGTGCAGTTGCAAAGATAATGGAACAGTCCTTGAGGCTCTTTTTTGAGCATCGGGATTTATCAGAGGTGAAAACTTATTTACAACGTCAGTGGAAGAGGATTCTTTCAGGTAGAGTCTCTCttaaagattttgtttttgctaAGGAGGTTCGCTTGGGAACCTACAGTGCAAGAGCCTCATCACTACCCCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGCTATGCTGAGCGAATACCTTATATTGTAATCCATGGAGGGCCTGGAGCCCGCCTGGCTGATATGGTTGTGGATCCATTGGAAGTTTTGGCTATTGATTCTCCATACAGAATGAATgatttatattacatcaataaacaaataataccTGCTTTGCAGCGGGTATTTGGGCTTGTCGGTGCCGACCTGAACCAGTGGTTCTCAGAAATGCCCCGTTCAAGAAGGGAAGCCTCTGCAAAGCATCCCTTCACTTCTAATTTGCATCGAACCAGAATTGATTACTATTATCTCTCAAAACATTGTATACTATGTGGTGGACTAGTCCAGGCATCAGACCATATATGCAGTCGGTGTTCCGAAAATGGTGTGGCTGCTGCAACAGCTTTGATCAgtaaaacttcaaagttgGAGCAAGAGATGCAACATCTTGTTGGTATATGTCACCATTGTGGAGGTGGGGACAGGCTTCTGGAAAGTGGTGTAAAGTGCACGTCCATTTCATGCTCGGTGTTCTATGAGAGGCAGAAAGTACAGAAAGAACTACTAACCACGAACCATGTCGCCGCAAGTAAAGGCTTGTACCCAAGATGCGCGGTGGAGTGGTTCTG 5846 0.4032 MADSQSNSKIFSVRIVSIDYYMAPPIPGLDICYSSFHGGKVNEVPVIRIYGSTPAGQKTCLHIHRALPYLYVPCADIPAQPDQSGDAYTYKVSATLEKALKLKGSAGSTRQHVHGCSLVRARKFYGYHSSEELFVKIYLYHPHDVSRAANLLLGGVVLDKSLQPHESHIPFILQFLVDYNLYGMGHVHLSKMKFRHPITYVSFDEGFNCNSQQRVADPGGDVCLGSSMRIPSSIPSDWMWQPPSELGASSNLEAHCPKRQSTCELEGDASVDEILNQQFKMYTSLSQTRSDVKMVQSLVPIWEEQLERIGIFEANISPDPGKPLPDEVLKSLSMGLDFEKIIFEFCSEAKTSSFSTSSEELRETDIIGSASPPDSLSEGGKLRGGEIDSSIKLLTVNERASSEMVGTLDIKATDREALNLLKWLASSQAAEDMNSDDELVCESILSPLLPAATVDQVLEKANVDYESESLKECQDILDSIDDVNELELPEEKPCSSNLSHCIQASLNNVIPQVDGSGDDGLSSPYASSAQTSSVMGMKSESKLSSEFPSLQNIGTSTVSKDKGNKLWGSLPLSVNQRVTNEQQVTSCMKHSFQSEPGDSVGSSYLTRYETEHGFCNLKSEGIGASDSKEAHALVNCSVRDLMRRKRCYQVEQDEFDPGSGIIKKLVLDKDEKQNVCTWQNRRDLETWQNREEKREVEENCDPEVSNHDYLLHGKLPLHAANDGCLQTSLLKDDHFGQHDMDGSEAIPVSRNITEGDTCQMNKGLGLHELKTLHSADSIDHSEAFSGKKFKVSTTHAKPLAPDAYTPKQDSFLDVQFMRTDAEHEVRVPKRSQETHFAASSSEHNFTIDFEMSVKDNSIQKSSHGSRSYMQHGQAKSYENAVGAIGSSDMEVLPSEKKDDQKPGEILVLCDTVGSASVVEDQDGKALDDFLRFSARNTLEVMETRNNCSAIGGSDSDGKKALGVTTHYKSDGSHLYLLTPKILPPSVGSVCKWLSCCERDQMHQKTDEEEKAAPECPSRPHARPSLDQDQNVDAEKNSSCISGGQIGVKKCLDGSQDISQILAPYEKLKSTPLSQIGFRDPASVGGGQQLALLSIEVLAESRGYLLPDPRFDPINILALGFQNDSNSSIEVLVLLHSKLESLQRSFDGLSACKVLVFNDEKDLLKKFIKIVSSSDPDILMGWDIQGGSLGFIAERASHLGLGLLNSLSRTPSESWVASQDTETSDKEIFVPLTPDTSGADCGAKENIIIEDEWGRTHASGVNVGGRIVLNVWRLIRGEVKLNLYSVEAVAELVLRRKIPSVQYKVLTKWFSSGPGQARYQCIKYITERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVLATKSNTLGVCSYSPEKHILQDLKDKILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAMKKLAPSEQVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNRQEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASAVTAMNPSPVTLKMEKVYYPCFLLTKKRYVGYSYESPGQSEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHRDLSEVKTYLQRQWKRILSGRVSLKDFVFAKEVRLGTYSARASSLPPAAIVATKAMRVDPRAEPRYAERIPYIVIHGGPGARLADMVVDPLEVLAIDSPYRMNDLYYINKQIIPALQRVFGLVGADLNQWFSEMPRSRREASAKHPFTSNLHRTRIDYYYLSKHCILCGGLVQASDHICSRCSENGVAAATALISKTSKLEQEMQHLVGICHHCGGGDRLLESGVKCTSISCSVFYERQKVQKELLTTNHVAASKGLYPRCAVEWF 1948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03304 1948 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1940 IPR030559 GO:0006281|GO:0016035|GO:0019985
Bva04g03304 1948 Pfam C4-type zinc-finger of DNA polymerase delta 1847 1920 IPR025687 -
Bva04g03304 1948 Gene3D - 1118 1397 IPR036397 GO:0003676
Bva04g03304 1948 Gene3D Palm domain of DNA polymerase 1400 1645 IPR023211 -
Bva04g03304 1948 SUPERFAMILY DNA/RNA polymerases 1401 1815 IPR043502 -
Bva04g03304 1948 MobiDBLite consensus disorder prediction 1004 1036 - -
Bva04g03304 1948 SMART polmehr3 1087 1593 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva04g03304 1948 CDD DNA_polB_zeta_exo 1086 1336 - -
Bva04g03304 1948 MobiDBLite consensus disorder prediction 363 382 - -
Bva04g03304 1948 MobiDBLite consensus disorder prediction 521 537 - -
Bva04g03304 1948 ProSitePatterns DNA polymerase family B signature. 1581 1589 IPR017964 GO:0000166|GO:0003676
Bva04g03304 1948 PRINTS DNA-directed DNA-polymerase family B signature 1579 1587 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva04g03304 1948 PRINTS DNA-directed DNA-polymerase family B signature 1523 1535 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva04g03304 1948 PRINTS DNA-directed DNA-polymerase family B signature 1414 1427 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva04g03304 1948 MobiDBLite consensus disorder prediction 513 537 - -
Bva04g03304 1948 Gene3D Helix hairpin bin 1480 1540 - -
Bva04g03304 1948 Pfam DNA polymerase family B 1355 1802 IPR006134 GO:0000166|GO:0003677
Bva04g03304 1948 Pfam DNA polymerase family B, exonuclease domain 1105 1284 IPR006133 -
Bva04g03304 1948 Pfam DNA polymerase family B, exonuclease domain 55 217 IPR006133 -
Bva04g03304 1948 Gene3D - 1656 1824 IPR042087 -
Bva04g03304 1948 CDD POLBc_zeta 1362 1810 - -
Bva04g03304 1948 Gene3D DNA Polymerase, chain B, domain 1 29 197 - -
Bva04g03304 1948 SUPERFAMILY Ribonuclease H-like 36 1361 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03304 Bva-Chr4 26592647 26605998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03304 39 209 Core DNA Replication Machinery Family AT5G63960 25.424 5.15e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03304 K02350 - gmx:100777934 2661.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03304 04 26592647 26605998 Bva04g03304 04 26592647 26605998 ECH