Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03302 ATGGCGCCATCAAGGAAATCTAGAAGTGTAAATAAGCGGTTTTCAAGTTTAAATGAGGTCTCCCCTGAGAAAGATGGAGTTAACTCGAATAAAAATAAGCAACGAAAGAAAAAGTTGTCTGATCAACTTGGAAGTCAGTGGAGCAAGGAGGAATTACAGAGATTTTACGAAGCATACCGGAAGTATGGGAAAGATTGGAAGAAGGTGGCTGCTGTTGTACGTAACAGATCCACTGAAATGGTGGAGGCTCTTTACAATATGAATAGGGCTTACTTATCTCTGCCAGAGGGAACAGCTTCTGTAGTTGGTCTCATAGCAATGATGACAGATCACTATAATGTACTGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCAGAAACCTTTGAAACGAAAGCGTGGAAAATTTCAGTCTAGCATCTCAAAAGATACGATTCAGTCTCAGTCAATTGCTTCCAATGATGGTTGCCTCTCTTTATTGAAGAGAAGGCGAGTTGAAGGTACCCAGCCTCGTGCAGTTGGTAAAAGGACACCTCGCTTCCCAATATCTTACTCTTATAAGAAAGATTGTAGGGAAAATTATGTTTCACCTGATAAAAGAAGGCTGAAGTCAGAGGTTGATGCTAATAATGATGACGTGGCACATGTGTTGGCAATGGCATTAACTGAAGCTGCACAAAGAGGCGGCTCTCCCCAGGTTTCTCAAACACAATACAGAAGAGCAGAGAAGTCCCCACCTGTTCGGAGTTTGGAGAGAAAGCATCAAAATTCTGAGGCAGCTCCTGTCAAGTTTCGCGATGCTTCTGCAGATGAAGAGTGGTTGGAAGGTAGTATAGAAAGCAGGGGAgctgaaaatgaagaatatgCTAGAGATACCAGTTCCTTGATGGACATGGAAGGTGTAAGCACAGTTGACTTTCAtgggaaggggaaaaaaatgtatagaaagaaagagaaagtggaAAATGTTGGAAACCATTTGCTTGATGATGGTGGAGAAGCATGTAGTGGCACTGAAGAAGGACTTAACATTACTTCTTCAGGAGAAAAGGTTGATATTGAGGTTACTAATGCTAAATCTGAGCAATTTTTTGGGAAAGGTCAGAggaaaagaagcaagaaactTTTCTTTGGAGATGAAAGCTCTGCCTTGGATGCATTGCAGACTTTGGCTGACCTGTCTCTAATGATGCCATCAGCCACAATGGAATCTGAATCATCTATCCAGTTAAAGGAAGAAAGAGTGGCTTCAGATAAAGATGAGAAGGCTGGTTTACCTGAAGCTACATTGACAAGCCAGAAcagagacaaaattaaaattccagGTCCGAAGCACAAGATTGCTCATGGTACTGAGGTTTCAACCTCACGAAAATCTAAACTTGGAAAGGAATTGACAAATGATGCGAATACTCTCTCTGAATCGAAAGAACATCTCTCTGCTAATAGAACATGGAAAAGGAAGCGCAAGCCCACGGTTTCAAGGATTTCTCATGCAAAGCTGGATTCTTTTCCAATTGATCCCTTGAATAATGAGGCGGTAGTTGAAGACAACAAGCCAGTGATGAAAGGAAAACACACTGGTCAGGCTTTTACTCTCCCAAAACAGTTGAAGTCAGTTAGATCATCAGAGAGCTCCTTGGGTAGTGATCAGAAAGATCAAACAGTGTCAACTGGAGAAGTTTCACTCGTAGGTGAAGTTTGTTTACCAACTAAACAGAGAAGAAGACGTAAAATGAGTCTTCAGAGAATATTCATACCAAAGGAGAAGTCCTCTGAGAACATTTTGAAAAGTCGATCTAATAAATACTCTACTCCCCTCCAAGACAGAGCTTTATGTTTAAAGGAAAAGCTTTGTGGTTGTTTGTCATCTTCTATGGTCCGTAGATGGTGTAGTTTTGAATGGTTTTATAGTGCAATTGATTTTCCATGGTTTGCTAAAAGGGAGTTCATGGAGTACTTAAACCATGTTGGATTAGATGATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTTATAAAAAGTTCGCTTGGAAAGCCTCGCAGGTTTTCTGAACACTTTCTAcgtgaagaaagacaaaagctTCAGCAGTATCGGGAATCTGTGAGGAAGCATTACACTGAACTTCGTACTGGTATTAGGGATGGACTTCCAACAGATTTAGCAAGACCTTTATTTGTTGGACAACGAGTAATTGCTCTTCACCCAAAAACAAGAGAGGTTCATGATGGAAGTGTGCTCACAGTTGATCATGATAGGTGCAGGGTTCAGTTTGACTGTCCTGAATTAGGGGTTGAATTTGTCATGGATATTGATTGCATGCCGTTGAATCCATTTGATAATATGCCCAAAGCTCTGAATAGACAGAATGGTGCAGGGCCTGCAGGCAAAGTCGCTTTTATGACTAAAGAGCCGCAGATGAATGGAAGTTCAAATTATGAGGGTTCTATGACATATCCTTCAAGTGGACCCGTGGAGAAAGCACCCACCACTTCAAGTACTTTGGTAAAGCTAGGAAAGGGTGATGTTAGTCATGACATTGCACATACAAAGGCTGCTACTTTTGATAACATTATTGCACAGCAAGCAGCATATGGTCAATCATGTGCGGTGACACATCATCAAGCTAGGGAAGCTGATATACATGCACTTTCTGAGCTGACTCGTGCTCTAGATAAAAAGGAATTGTTATTAATGGAGCTTAGGCGTTCAAACTGTGACATaatggaaaaccaaaatgacaTAGATTGCTTAAAAGATTCGGAGTCTTTCAAGAAGCATTACGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGGCAGgtTTCTTCAGCTTTGCTTCATTTGAGGCTACGCAATACTCACACAGGCAACTCTCTGCCACCATGGATGAAACCCCAGGCAACTTCCAGTGTTCATGATGGCCTTCCGAGTACATTGGACATTTCTCTATCACAAGACTTGGGGTCAACCGTTATTGAAATTATCAAAGGATCCGGGCTCAGGGCACACGCCATGGTGGATGCTGCAATTCAGGCATTGTCTTCGACAAAGGAAGGTGAAGACACTTTTATGAGGATTGGCCAGGCATTGGATTCTATTGATTATCAGCAGTTGTCCTCCAACTCTAGTTTACCTGGGACGAGGTCCCAGGAACAAGTGAATGGCAATTTCAGTCGCCATAATGCATCAGAACCTTTGCATAGTGATGCATATGGTCAAAAATTACTGAATGAGTCTGACAAAGTTGACGTTCAAATTCCTTCTGAGCTCATCGCTTCCTGTGTTGCTACGTTAATCATGATACAGACTTGTACAGAACGACAATATCCTCCAGCTGATGTGGCTCAGATACTAGACTCCGCCGTTACCAGCCTGCATCCATGTTGTCCTCGGAACCATCCTATTTACAGAGAAATCCAAATGTGCATGGGAAGAATCAAGACCCAAATTTTAGCTCTTATCCCAACTTG 3488 0.4068 MAPSRKSRSVNKRFSSLNEVSPEKDGVNSNKNKQRKKKLSDQLGSQWSKEELQRFYEAYRKYGKDWKKVAAVVRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSERESNDAPGSQKPLKRKRGKFQSSISKDTIQSQSIASNDGCLSLLKRRRVEGTQPRAVGKRTPRFPISYSYKKDCRENYVSPDKRRLKSEVDANNDDVAHVLAMALTEAAQRGGSPQVSQTQYRRAEKSPPVRSLERKHQNSEAAPVKFRDASADEEWLEGSIESRGAENEEYARDTSSLMDMEGVSTVDFHGKGKKMYRKKEKVENVGNHLLDDGGEACSGTEEGLNITSSGEKVDIEVTNAKSEQFFGKGQRKRSKKLFFGDESSALDALQTLADLSLMMPSATMESESSIQLKEERVASDKDEKAGLPEATLTSQNRDKIKIPGPKHKIAHGTEVSTSRKSKLGKELTNDANTLSESKEHLSANRTWKRKRKPTVSRISHAKLDSFPIDPLNNEAVVEDNKPVMKGKHTGQAFTLPKQLKSVRSSESSLGSDQKDQTVSTGEVSLVGEVCLPTKQRRRRKMSLQRIFIPKEKSSENILKSRSNKYSTPLQDRALCLKEKLCGCLSSSMVRRWCSFEWFYSAIDFPWFAKREFMEYLNHVGLDDIPRLTRVEWSVIKSSLGKPRRFSEHFLREERQKLQQYRESVRKHYTELRTGIRDGLPTDLARPLFVGQRVIALHPKTREVHDGSVLTVDHDRCRVQFDCPELGVEFVMDIDCMPLNPFDNMPKALNRQNGAGPAGKVAFMTKEPQMNGSSNYEGSMTYPSSGPVEKAPTTSSTLVKLGKGDVSHDIAHTKAATFDNIIAQQAAYGQSCAVTHHQAREADIHALSELTRALDKKELLLMELRRSNCDIMENQNDIDCLKDSESFKKHYATVLVELKEASGQVSSALLHLRLRNTHTGNSLPPWMKPQATSSVHDGLPSTLDISLSQDLGSTVIEIIKGSGLRAHAMVDAAIQALSSTKEGEDTFMRIGQALDSIDYQQLSSNSSLPGTRSQEQVNGNFSRHNASEPLHSDAYGQKLLNESDKVDVQIPSELIASCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPRNHPIYREIQMCMGRIKTQILALIPT 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03302 1162 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Bva04g03302 1162 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1162 IPR028306 -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 229 267 - -
Bva04g03302 1162 PANTHER LIN-9 1 1162 IPR010561 GO:0006351|GO:0017053
Bva04g03302 1162 CDD SANT 47 81 IPR001005 -
Bva04g03302 1162 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Bva04g03302 1162 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Bva04g03302 1162 Pfam DIRP 640 741 IPR033471 -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 1 25 - -
Bva04g03302 1162 SMART sant 43 91 IPR001005 -
Bva04g03302 1162 Coils Coil 693 713 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 26 44 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 232 247 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 249 267 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 412 430 - -
Bva04g03302 1162 ProSiteProfiles Myb-like domain profile. 45 86 IPR001005 -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 117 149 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 408 497 - -
Bva04g03302 1162 SMART DIRP_2 641 742 IPR033471 -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 814 835 - -
Bva04g03302 1162 Gene3D - 3 99 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 443 469 - -
Bva04g03302 1162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 81 IPR017930 -
Bva04g03302 1162 Coils Coil 889 909 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 1 44 - -
Bva04g03302 1162 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03302 Bva-Chr4 26574519 26585703 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g03302 DIRP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03302 - - gmx:100816217 1555.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03302 04 26574519 26585703 Bva04g03302 04 26574519 26585703 ECH