Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03297 ATGTCAAACGGCGATAGCGGTAGCTTCTCTACAGAGAACACTGGAGAAGACGGAGTTAAACAGCAAGGAGAGCTACTTGGTCATCAGTTTCACAGTCCAAACTATTCTCTCACGTCTTCAACTACAACTATTAGCAATGGTTCCAATTCCAACACCAATTCACAGCAGCCACCTCCACCTGTTAAGAAGAAACGAAGCTTACCGGGAAATCCAGATCCAAATGCCGAGGTGATAGCTCTATCTGCAAACGCCCTAATGGCCACCAACAGGTTTATATGTGAAATTTGCAACAAAGGGTTTCAAAGGGAACAAAACCTTCAGTTGCACCGGCGAGGCCATAACCTGCCGTGGAAGCTAAAGCAAAGAACCAGCGCCGAAGTTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCGTGCGTTCACCACAATCCGGCCCGTGCATTGGGTGATCTCACTGGCATCAAGAAGCACTTCTGCAGGAAACATGGCgagaagaaatggaaatgtGATAAATGCTCTAAGAAATATGCAGTTCGATCTGACTGGAAAGCCCATTCAAAGATCTGTGGTACTAGGGAATACAAATGTGACTGCGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACTCACCGAGCTTTCTGTGACGCCCTGGCTGAGGAGAATAACAAAGTCAATGAAGGGCAAATGCCTAAACTGGGTTCAAGCCTTCAAATGCAAGTCCCTCCCGAGCTGATGTCAATGCCTACGAAACCCTTCGACATGGGCGGCGCTGCCGGGACCTTACTCACTACTAGAAGGGACACTTCCTCTCCTTCACTAAAGCTCAGCTCAAACTCACTAAACatctttgaagaaaatggaCGCCAATTAGTTGGCTCGACCCACATGTCCGCCACAGCATTGCTGCAGAAAGCTGCACAAATGGGAGCAACTGTGAGTACTAGCAGCCCCATGAACCCTTCCATGGCAGAAAAGGGTTTTGTGACAAGCATCGCACCGCCGTCATTTGGTGCGTTACAACCTCCAAATGGGATTAGCTTAATGAATCACTTTGTGCAGAATGACCAACAACACCAACAGAATATTCCATCTCAGTATTTCGGGGGGAATGGGATTCCTGCAGGTAACGTTGGAATGAACAGCGTGGATATGTTTAACGCTATATTGGATCAGAGTAAGGCTTTGTCAAAGTTCATAGAGCATAATAGAGGAAGCAATGATGGAGTTTTGCATGGTGGAGGCGTACTTAATGCTATGCCAAGTAGCGGTTCTGGTACAAAAGAAAGTGGGGATGTGACGACTCTTGATTTCTTAGGGATAGGCGGAGGCGGTGGTGTTCATGGCAATTTCTATGGCCAACAAGCAGAAAAAGGAGATGAAGCTTGGAGAAACTGGTCAGCCAGGAATGCAGGCTTTGAATCATTCTCAGCAACAAGCAGCTA 1445 0.4623 MSNGDSGSFSTENTGEDGVKQQGELLGHQFHSPNYSLTSSTTTISNGSNSNTNSQQPPPPVKKKRSLPGNPDPNAEVIALSANALMATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTSAEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVRSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNEGQMPKLGSSLQMQVPPELMSMPTKPFDMGGAAGTLLTTRRDTSSPSLKLSSNSLNIFEENGRQLVGSTHMSATALLQKAAQMGATVSTSSPMNPSMAEKGFVTSIAPPSFGALQPPNGISLMNHFVQNDQQHQQNIPSQYFGGNGIPAGNVGMNSVDMFNAILDQSKALSKFIEHNRGSNDGVLHGGGVLNAMPSSGSGTKESGDVTTLDFLGIGGGGGVHGNFYGQQAEKGDEAWRNWSARNAGFESFSATSS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03297 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 447 - -
Bva04g03297 481 Gene3D Classic Zinc Finger 146 225 - -
Bva04g03297 481 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Bva04g03297 481 SMART c2h2final6 91 113 IPR013087 -
Bva04g03297 481 SMART c2h2final6 132 162 IPR013087 -
Bva04g03297 481 SMART c2h2final6 167 187 IPR013087 -
Bva04g03297 481 MobiDBLite consensus disorder prediction 1 75 - -
Bva04g03297 481 Gene3D Classic Zinc Finger 87 114 - -
Bva04g03297 481 MobiDBLite consensus disorder prediction 1 18 - -
Bva04g03297 481 MobiDBLite consensus disorder prediction 27 60 - -
Bva04g03297 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Bva04g03297 481 MobiDBLite consensus disorder prediction 411 431 - -
Bva04g03297 481 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Bva04g03297 481 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Bva04g03297 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 18 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03297 Bva-Chr4 26544493 26548043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03297 48 314 IDZ Gene Family AT3G50700 54.740 3.85e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g03297 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03297 - - gmx:100785295 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03307 13 22843454 22846950 Bva04g03297 04 26544493 26548043 ECH
Bva04g03297 04 26544493 26548043 Bva04g03297 04 26544493 26548043 ECH