Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03281 ATGGGGGTGTACAATGAGGAACAAACTAAAGATCTTGCACGTGCGCGTGTTAGCACATCATCGTCGCCTTGCATCTGTTTAGGCGCAGCACTTTGTTTCGCTCAGTTTCTTCCCAGAATGAGTCGACGGTCTAATAGCACTATCTATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGAGAAGTGGAGGATCTGTTCTACAAgTACGGTCCCATCATTGACATTGATTTGAAAATCCGTCCTAGACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATCCTCGTGACGCTGAAGATGCAGTTCATTATCGAGATGGGTACGATTTTGATGGCTTTCGATTACGAGTCGAACTTGCACATGGTGGGCGGGGATATTCATCATCAGTAGACCGATATAGTAGCTATAGTGGTGGAAGCCGTGGAGCTTCCAGACGTTCAGACTATCGGGTTTTGGTCACTGGATTACCTCCTTCAGCTTCGTGGCAAGACCTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTCAAATCTTCCGTGAGCGTGGTGGCATGATGGGTATTGTGGATTATACCAACTATGAAGATATGAAATATGCTATCAGGAAATTAGATGACTCAGAATTTCGGAATGCCTTTTCTCGGGCATTTATACGAGTACGGGAGTATGATCGACGAAGTTATTCTAGGAGTCCTAGTTATGATTCAAGGAGGAGCTATTCCAGGAGTCGTAGCTATAGTGGCAGGAGCAGAAGTTTTTCTCCCAAGGCAAGACACTCCCGACCTTTAGGATCTCTCTCAAGATCCCGATCGAGATCCAGATCTCCAAATTTATCTCCTCTGCCTTGCAAAGGTCGCAGTCCTAGCCAAAGTCCGAGGAGCAGCTTATCACAATCCCGTTCGCCTTCAGCCAGAGCCGAACGAAGCAGATCTGCTGATTCTGGAGATCGTTATTA 959 0.463 MGVYNEEQTKDLARARVSTSSSPCICLGAALCFAQFLPRMSRRSNSTIYVGNLPGDIRLREVEDLFYKYGPIIDIDLKIRPRPPGYAFVEFEDPRDAEDAVHYRDGYDFDGFRLRVELAHGGRGYSSSVDRYSSYSGGSRGASRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQIFRERGGMMGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAFIRVREYDRRSYSRSPSYDSRRSYSRSRSYSGRSRSFSPKARHSRPLGSLSRSRSRSRSPNLSPLPCKGRSPSQSPRSSLSQSRSPSARAERSRSADSGDRY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03281 319 MobiDBLite consensus disorder prediction 229 319 - -
Bva04g03281 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 115 IPR000504 GO:0003723
Bva04g03281 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 212 IPR000504 GO:0003723
Bva04g03281 319 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 42 313 - -
Bva04g03281 319 Gene3D - 38 147 IPR012677 -
Bva04g03281 319 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 42 313 - -
Bva04g03281 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Bva04g03281 319 SUPERFAMILY RNA-binding domain, RBD 44 214 IPR035979 GO:0003676
Bva04g03281 319 CDD RRM1_SF2_plant_like 47 118 - -
Bva04g03281 319 CDD RRM2_SF2_plant_like 148 223 - -
Bva04g03281 319 MobiDBLite consensus disorder prediction 234 254 - -
Bva04g03281 319 Gene3D - 148 225 IPR012677 -
Bva04g03281 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Bva04g03281 319 SMART rrm1_1 47 117 IPR000504 GO:0003723
Bva04g03281 319 SMART rrm1_1 149 218 IPR000504 GO:0003723
Bva04g03281 319 MobiDBLite consensus disorder prediction 265 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03281 Bva-Chr4 26465097 26469740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03281 18 225 Eukaryotic Initiation Factors Gene Family AT4G34110 24.885 1.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03281 K12890 - gmx:100794282 313.923