Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03271 ATGTCATCAGAGGATgtagagaggaagaagagagttGCGGTTATTGGCGTTTCGGCCTTCTTATTGGTGGCTATGGTTGTCGCCGTTACGGTTGGTATTGTATTAGAACAGAACGATTCTTCTGGCGAGGATCATCCTCAGGACAAAGCCAATTCTCACGTTTCTAACTCTTTCAAGGCTGTGAAATCGCTTTGCCAACCCACTGATTACAAACAGGAATGCATTGACAGCCTGAAAGATGAGGTTGGCAATGTGACAAACCCACGAGATTTGATCAAGATTGCATTTAACATCACTATTAAAAACATAGTTGAAGGAGTGAAGAAATCCCAGTTGTTGCAAGATGTGGAGAAGGAACCAAGAGCCAAGATGGCACTTGATTCATGCAAGTATTTGATGGAGCAATCCGCTGCTGAATTTGAACGCTCGGTTGAGAAAATTGGCGAATTTGATGTCACGAACATCCAAGATATACTCATGGACTTGAAGGTTTGGCTCAGCGGTGCCATCACATACCAAGAGACATGCTTAGATGGGTTCCAGAATTCAACAAGCGACGCTGGTCAGCAGATGAAGGACGCATTGCAACTAGCCATGCACTTGAGTAGCAATGGGCTTGCCATCATCGACAGTTTCTGTGCAACTCTCGCGAAATTAAACATCACACCATCACAAGGGGGACCGCGCAGATTGCTTCAACTCGAGGAGAACGTTCTGGGTCACGGCGAGCTTCCCTTGTGGATTGGCGGTGGTATTCGTCGGAGACTCCTATCTGACAAAGTCCCAGGTTTGGGCAAACGCAAGGCTGATGCTGTCGTTGCCAAAGACGGGAGTGGAGATTTCAACAGCGTCAACGAGGCATTGAAGAAGGTAcccaagaaaaacaacaaaccGTTCATAATCTACATTAAGGAAGGCGTTTACAATGAGTATGTAACCGTCCAGAGGAGTATGTCCAATGTCATCTTCATCGGTGATGGTGGAGAAAAGACACGCATCACCGGCAACAAAAACTTCATCGACGGGGTTAACACTTTCAAAACCGCCACCGTTGCCGTCGAAGGAGATTACTTCATGGCTGTGAATATTGGGTTCGAGAACTCTGCTGGTGCCGAGAAACATCAGGCAGTGGCGTTGAGAGTGGGAGCAGACATGACCGTGTTCTATAAATGCACAATGGATGGGTACCAAGACACACTTTATGCCCACACCAAGCGTCAGTTCTACAGGGATTGCACTATTTCGGGCACAATTGATTTTGTGTTTGGCGATGCTCTTTCCATATTCCAAAACTGCACTTTCAAGGTGAGGAAGCCAATGGAAAACCAGCAATGCATTGTGACTGCACAAGGCAGAAAGGATAGACATGAACCAACAGCCATAATCATCCAAGGAGGATCAGTTGTGTCGGATCCATCATTTTACCCTTTTAGGTTCTCCAACAAAGCCTACTTGGCTCGTCCCTGGAAGCTTTATTCAAGGACCATCATCATGGATGCATTCATCGACGATTCCATAACACCCGAAGGTTATTTGCCGTGGCAAGTCAACCTAACCAGCGTGGGGACTAATTCTTGCTTCTATTCCGAATTCAACAACCGGGGCCCCGGTTCAGACAAATCCAAGCGAGTTCGATGGCCCGGTATCAAGACCATATCAGCAGAACACGCTCTTGATTTCACACCATTCAGGTTTTATAAAGGAGACGCTTGGATTAAGAAAACCGGAGTACCATACTCCCCTTCCATCTTTTCCACAAAATCTGATTCTGATGGAAAGCGCAACTCTGATGATTCCAACTA 1802 0.4539 MSSEDVERKKRVAVIGVSAFLLVAMVVAVTVGIVLEQNDSSGEDHPQDKANSHVSNSFKAVKSLCQPTDYKQECIDSLKDEVGNVTNPRDLIKIAFNITIKNIVEGVKKSQLLQDVEKEPRAKMALDSCKYLMEQSAAEFERSVEKIGEFDVTNIQDILMDLKVWLSGAITYQETCLDGFQNSTSDAGQQMKDALQLAMHLSSNGLAIIDSFCATLAKLNITPSQGGPRRLLQLEENVLGHGELPLWIGGGIRRRLLSDKVPGLGKRKADAVVAKDGSGDFNSVNEALKKVPKKNNKPFIIYIKEGVYNEYVTVQRSMSNVIFIGDGGEKTRITGNKNFIDGVNTFKTATVAVEGDYFMAVNIGFENSAGAEKHQAVALRVGADMTVFYKCTMDGYQDTLYAHTKRQFYRDCTISGTIDFVFGDALSIFQNCTFKVRKPMENQQCIVTAQGRKDRHEPTAIIIQGGSVVSDPSFYPFRFSNKAYLARPWKLYSRTIIMDAFIDDSITPEGYLPWQVNLTSVGTNSCFYSEFNNRGPGSDKSKRVRWPGIKTISAEHALDFTPFRFYKGDAWIKKTGVPYSPSIFSTKSDSDGKRNSDDSN 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03271 600 Pfam Pectinesterase 270 569 IPR000070 GO:0030599|GO:0042545
Bva04g03271 600 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Bva04g03271 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Bva04g03271 600 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Bva04g03271 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 212 IPR035513 -
Bva04g03271 600 SMART PMEI_2 56 208 IPR006501 GO:0004857
Bva04g03271 600 PANTHER PECTINESTERASE 10 583 - -
Bva04g03271 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 210 IPR006501 GO:0004857
Bva04g03271 600 CDD PMEI-like_3 63 212 - -
Bva04g03271 600 Gene3D - 265 583 IPR012334 -
Bva04g03271 600 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Bva04g03271 600 SUPERFAMILY Pectin lyase-like 268 581 IPR011050 -
Bva04g03271 600 PANTHER PECTINESTERASE 10 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03271 Bva-Chr4 26423716 26426004 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03271 4 585 Carbohydrate Esterase AT3G05610 48.110 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03271 K01051 - gmx:100803527 707.597