Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03270 ATGAGCAAGCAGCAGCAAAACGGGGAGAAGAGGATATCTCGCTTGGGAACAAAGGCTGTACGAGTGAACATAACATTCCGTAACACAGCTGGAGCAATCAATGGGCAAGCAGTAGCCATGCGAAGAGATGCACATCTGTCTGCATTCTATTACTGTAGCTTTGAAGCATACCAAGACACATTATATACTCATTCTATGAGACAATTTTATAGAAACTGTGACATTTATGGTACGGTGGACTTCATATTTGGTAACGCAGCAGTTGTTCTCCAACAATGCAACATCTACCCCAGATTTCCACTGCCAGGCCAATACAATACCATCACAGGACAGGGCCGCACTGATATCAATCAGAACACCGGAACTTCCATCCACAACTGCGCCATCACTGCGGCGAGTGGTTTAGCAGCTAGCAATGGCACTGCAGAGACATATCTGGGGAGGCCATGGAAGCAATACTCACGAACAGTTTACTTGCAGTCTTTCATGGATAGTCTCATTGATCCTGCACCTTTGCCTTGGACACCCTTTATTATGCAGAGTTTGATAATTGGGGACCAGGATCTAACACAAGTAACAGAGTG 584 0.4555 MSKQQQNGEKRISRLGTKAVRVNITFRNTAGAINGQAVAMRRDAHLSAFYYCSFEAYQDTLYTHSMRQFYRNCDIYGTVDFIFGNAAVVLQQCNIYPRFPLPGQYNTITGQGRTDINQNTGTSIHNCAITAASGLAASNGTAETYLGRPWKQYSRTVYLQSFMDSLIDPAPLPWTPFIMQSLIIGDQDLTQVTE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03270 194 PANTHER PECTINESTERASE 15 175 - -
Bva04g03270 194 PANTHER PECTINESTERASE 15 175 - -
Bva04g03270 194 SUPERFAMILY Pectin lyase-like 16 171 IPR011050 -
Bva04g03270 194 Pfam Pectinesterase 14 174 IPR000070 GO:0030599|GO:0042545
Bva04g03270 194 ProSitePatterns Pectinesterase signature 2. 75 84 IPR033131 -
Bva04g03270 194 Gene3D - 7 186 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03270 Bva-Chr4 26422020 26423145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03270 20 170 Carbohydrate Esterase AT4G02330 70.199 1.15e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03270 K01051 - gmx:100801141 256.914