Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03256 ATGTTGAGGGCATACTCGTCAATTGAGAAAACATCATATGCCAAATGTTTGAACGTTCGTAGAGATGAATGGTGTTTTGGTAATTCTGTGGGTGACCTGACCTCCAAGTCCAAAGAGTCGCAGAGATGCGGACGCCATAAGAACGTTCTTGCGGTTACTGTGTGTTACAATGAGAaagtgtataaattaaaacgaACCAAAACCGCAGTAGCCGAAAGAAACATTTTCTGGAGATTGGAAAACAATTGTATCGTTTGCGCAGCTCTGTTCCTCCTCTCGCAGATGGTAAGGGGAGGAAAGGTTAGTAGCAAACGCAATTTCAGGGGAAGGGTTCCGTCAAAGGGAAGGGATTCTGATGATTCGGATGAGGACTATGTAGTTTCAGATGAAGGTAGAGATGTGTCTGAGGATTATTGTTCTTCTTTAGATGGATGTGCTTCAGAGGACAGTTTTGATAGTTTTGTAGATGAAGAGGAGGAGGATGTGGAGGAGGAAGTTGAAGGATTAAGGAAAACTAATAGATCAAATGGTTATTGCAGTCAGCGGAAAGGAGGAGGTAAAACATCTAAAAAGAGGGACAAGACTACAAATGCACAACTGCTcgaagaagaggaggaaaaagacGAAGTAGATGAGGATGAGGATGAATATGAGGAGGAAGACGATGAGGATTTTGatattgatgatgatgaggagTTTACTCCAGAGGAAGAAGAGTATTCagatgaggaagaagaaatgaggggtagaaagaagaaaaataacagtATGAAAATGGGCAAGAAGGTATTGCAGAAAAGAGTCTCTGTGACTTCTACTAGAGGTCGAAAGAGGAGGAGGGGTTCGAGAGTTGCAAGGAAGcccttgaaaaagaaaagaagaaatgcagGTTTGAGGAGGAAAGTAAGATGTTATGATGATGGTGATTTTATAGATAATGGCTCAGATGTAAGGACAAAGCGTAAGAAAAAATCAGTCTCAAAAAAGAGAAGACGAGTGGATTCTGATTCGGACTGTGTGTCTTCATCTGATTACGAGTTTACCATCtcagaggaagagagagaacaaGTGAGAGAAGCTGAGGAATTGtgtggaagtttgagacctaaCTTGAGGAGTTCATCAGGTATGATGAAAAATGAAGAGGATGGTGTTCATGAAGATCCACATCGACAAAGGAAGCCTCCATGTCGGAAGGGtaaggaaaagatagaagaaGCTCAAGGGAAAAAAGGTAAGGAAAAGTTTGAGGATTTAAAAAGTGAGGTGGTAAAGCAAGTCTGTGGGATTTGTCTGTCAGAGGAAGATAGAAGAAGAGTAAGGGGGGTGCTAAATTGTTGCACccactatttttgttttgcttgcATTATGGAGTGGTCAAAGGTGGAAACTCGCTGCCCTTTGTGTAAGCAGAGATTCACAACAATTAGTAAGCCTGGACGAACAACACAAGGGGTTGATTTGAGAGAAGTGGTGGTGGTACAAGTACCCGAGCGAGATCAGGTTTATCAGCCGTCCGAGGAAGAACTCAGGAGCTATATTGATCCATATGAATCCGTGATTTGTTCAGAGTGCCATCAAGGCGGGGATGATGCCCTAATGTTACTCTGTGATCTCTGCGATTCACCTGCACACACATATTGTGTTGGTCTCGGGCGGGAAGTACCTGATGGAAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCCCAAGTTCAAGAACAGGTGTCTGATCCAAGGGTTACACTTCAGAGCTTGCCTGGTAGACCATCACCTGCATTACATGTACGAGAAAGCATAGATCTTAACTTGACGTCTTCACCTAGTACATCTTTTAGTCAAGTGCTAGGGAATATTTCGGCTTCTAGGTTCTCTAGCAGAAGTGTGGAAGGAGCTTCTCCACCATCTGGAGGAGGGGCAACAACTTTAACAGGGAGGCGCTGGATACAACGTCATATTCAACAGTTTCTTTCAATGGATAGAATGAATTCTAGAATTGGCAGAATTAATGGTATCTCAGCTCCCGGTTCAAATAGTAACTTGTGCAGCTCTCAAATTGATCAGAGTATGGAAACAGCAACTCAACATTCAAGGATACAGGATGTGGGAACATCATATCACACATTCCTTGATGATAGATTATGCAATAATTCCTCTCCGCCCATGCAGAATGGGGATCTTTTACACATGAGAATAAGCAACTCAAGGACACCACTTCAAGATTCAACTACATTTACCGACAGAACCATGAATGGGGCAGTATGGCCTGGCCTTGTGGGAACACCCCCAGCCCAATTATCAGAATATGAACAAGTCCATGAGTTGAGTGGCAGACCAAACACTGTTACTGATATTTCCCCTCCTGTCAGAGAAGAGAGTCACCTTGCAAAGGAACAGTTACAGTCAATGGTTAGTTGCCACCTGAAGAGCTTGTCAcaagatattaatttaaGCAGCGTTACCTTTAAGGACATTGTAAGGAGTTGTACACACACCGTGCTAGCAGTGTGCGGTTTTGAGCACAAGAAGAGTGAGGTTTGCTCTGTGCCGCCACCGTCCGTGTGCTCCCACAACGTTCAAGTAATGGCTAGTGGACAAACGAGTCTGCTTCAAGGCTGCTGCTCATCTtgctttgattcttttttagtAGATGTGGTGAAGAGGATTATGGACACAAAATTGTCGTCAGGGTGGTTACGGTTAGGTCTTTA 2726 0.4006 MLRAYSSIEKTSYAKCLNVRRDEWCFGNSVGDLTSKSKESQRCGRHKNVLAVTVCYNEKVYKLKRTKTAVAERNIFWRLENNCIVCAALFLLSQMVRGGKVSSKRNFRGRVPSKGRDSDDSDEDYVVSDEGRDVSEDYCSSLDGCASEDSFDSFVDEEEEDVEEEVEGLRKTNRSNGYCSQRKGGGKTSKKRDKTTNAQLLEEEEEKDEVDEDEDEYEEEDDEDFDIDDDEEFTPEEEEYSDEEEEMRGRKKKNNSMKMGKKVLQKRVSVTSTRGRKRRRGSRVARKPLKKKRRNAGLRRKVRCYDDGDFIDNGSDVRTKRKKKSVSKKRRRVDSDSDCVSSSDYEFTISEEEREQVREAEELCGSLRPNLRSSSGMMKNEEDGVHEDPHRQRKPPCRKGKEKIEEAQGKKGKEKFEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWSKVETRCPLCKQRFTTISKPGRTTQGVDLREVVVVQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDALMLLCDLCDSPAHTYCVGLGREVPDGNWYCDGCRPVALGSSSSQVQEQVSDPRVTLQSLPGRPSPALHVRESIDLNLTSSPSTSFSQVLGNISASRFSSRSVEGASPPSGGGATTLTGRRWIQRHIQQFLSMDRMNSRIGRINGISAPGSNSNLCSSQIDQSMETATQHSRIQDVGTSYHTFLDDRLCNNSSPPMQNGDLLHMRISNSRTPLQDSTTFTDRTMNGAVWPGLVGTPPAQLSEYEQVHELSGRPNTVTDISPPVREESHLAKEQLQSMVSCHLKSLSQDINLSSVTFKDIVRSCTHTVLAVCGFEHKKSEVCSVPPPSVCSHNVQVMASGQTSLLQGCCSSCFDSFLVDVVKRIMDTKLSSGWLRLGL 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03256 908 SUPERFAMILY FYVE/PHD zinc finger 498 567 IPR011011 -
Bva04g03256 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 571 IPR013083 -
Bva04g03256 908 MobiDBLite consensus disorder prediction 300 320 - -
Bva04g03256 908 MobiDBLite consensus disorder prediction 151 341 - -
Bva04g03256 908 PANTHER F18C1.6 PROTEIN 95 897 - -
Bva04g03256 908 MobiDBLite consensus disorder prediction 202 243 - -
Bva04g03256 908 Pfam Ring finger domain 427 470 IPR001841 -
Bva04g03256 908 Coils Coil 200 223 - -
Bva04g03256 908 MobiDBLite consensus disorder prediction 379 411 - -
Bva04g03256 908 SMART ring_2 428 469 IPR001841 -
Bva04g03256 908 PANTHER F18C1.6 PROTEIN 95 897 - -
Bva04g03256 908 Pfam PHD-finger 521 567 IPR019787 -
Bva04g03256 908 SMART PHD_3 521 566 IPR001965 -
Bva04g03256 908 MobiDBLite consensus disorder prediction 151 165 - -
Bva04g03256 908 ProSiteProfiles Zinc finger PHD-type profile. 519 568 IPR019787 -
Bva04g03256 908 MobiDBLite consensus disorder prediction 271 299 - -
Bva04g03256 908 MobiDBLite consensus disorder prediction 368 411 - -
Bva04g03256 908 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Bva04g03256 908 CDD RING-HC_Topors 428 470 - -
Bva04g03256 908 MobiDBLite consensus disorder prediction 103 130 - -
Bva04g03256 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 489 IPR013083 -
Bva04g03256 908 SUPERFAMILY RING/U-box 427 476 - -
Bva04g03256 908 ProSiteProfiles Zinc finger RING-type profile. 428 470 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03256 Bva-Chr4 26347271 26351496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03256 436 565 C2H2 Transcription Factor Family AT3G01460 28.667 6.97e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva04g03256 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03256 - - gmx:100791422 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03256 04 26347271 26351496 Bva04g03256 04 26347271 26351496 ECH