Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03254 ATGGCGTCAAGGAACCGCACTCTGCTGTATAGAAAGTACAGAGATGCATTGAAGAGTGTTCGGGCTCCCTCTAGCTCTTCGACGACCACCACTTCCGGCGGTGCTGGTGGCCCCGTCATCGAATTGGTCAGCACCTCACTTCTCAATCCCAATCGCTCTTACGCTCCTCTTAGTACTGAGGATCCTGGCAATTCAAGCAAGGGTCCACTCACTGTGGGACTACCTCCAGCATGGGTGGATTTTTCTGAAGAAATATCAGCAAACGTGCAACGTGCACGCACCAAAATGGCAGAGTTAGCCAAGGCTCACGCGAAGGCTTTAATGCCATCATTTGGAGATGGTAAAGAAGATCAACGTGTGATTGAGACTCTCACGCATGAGATCACCGACTTAATAAAGAGATCAGAAAGGAGTTTGCAAAGACTGTCTGCTGCTGGGCTTTCTGAGGATtcaaatttgaggaaaaaCGTGCAGCGCTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGAGCTCCGAAAGAAACAATCAACTTATCTGAAGCGCCTCAGGCAGCAAAAAGAGAGTCAAGATGGAGTTGATTTAGAGATGAACATAAATGGAAGTAAATCCAGATTTGAAGATGATCACTTGGATAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAGAGTGAAGCATTCACagcagagagagaaaaagagatccAACAGGTTGTCGAATCTGTAAACGAGCTGGCTCAGATTATGAAAGATTTATCAGTACTAGTGATAGATCAGGGAACCATAGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTCAAACAGTTGCAGAAGGCAGAGAGATCACAAAAACAAGGGGGTATGGTAATGTGCACTACGGTGCTTGTTATCATGTGCTTCATCATGTTGGTTCTCTTAATCCTGAAGGAGATAATCTTGTG 974 0.4353 MASRNRTLLYRKYRDALKSVRAPSSSSTTTTSGGAGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSKGPLTVGLPPAWVDFSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQRVIETLTHEITDLIKRSERSLQRLSAAGLSEDSNLRKNVQRSLATDLQSLSVELRKKQSTYLKRLRQQKESQDGVDLEMNINGSKSRFEDDHLDNMVFNEHQMAKLKKSEAFTAEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERSQKQGGMVMCTTVLVIMCFIMLVLLILKEIIL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03254 324 Pfam SNARE domain 264 316 IPR000727 -
Bva04g03254 324 CDD SNARE_syntaxin16 232 289 - -
Bva04g03254 324 PANTHER SYNTAXIN 1 319 IPR045242 -
Bva04g03254 324 SMART SynN_4 69 184 IPR006011 GO:0016020
Bva04g03254 324 SMART tSNARE_6 223 290 IPR000727 -
Bva04g03254 324 MobiDBLite consensus disorder prediction 51 70 - -
Bva04g03254 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Bva04g03254 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva04g03254 324 SUPERFAMILY t-snare proteins 74 283 IPR010989 GO:0016020|GO:0016192
Bva04g03254 324 Coils Coil 82 102 - -
Bva04g03254 324 MobiDBLite consensus disorder prediction 51 66 - -
Bva04g03254 324 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 319 - -
Bva04g03254 324 Gene3D - 75 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03254 Bva-Chr4 26338256 26342338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03254 1 324 SNARE and Associated Proteins AT5G26980 78.154 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03254 K08489 - gmx:100796741 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03259 13 22618323 22622054 Bva04g03254 04 26338256 26342338 ECH
Bva04g03254 04 26338256 26342338 Bva04g03254 04 26338256 26342338 ECH