Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03252 ATGTCGTATAGACCTACTGGTAATAATTCGAGGACTGAGGTTCGCCGGAACCGTTACAAGGTAGCCGTAGATGCTGAAGAAGGTCGGAGACGGCGAGAGGATACCATGGTCGAGATCCGGAAGAACCGTAGAGAAGAAAGTTTGCTAAAGAAGAGGCGCGAGGGCCTCCAAGCTCAGCAGATGCCTGCTTCAATTCACTCTACTGCAGTAGAGAAGAAGTTGGAACACCTACCTAACATGGTTGCAGGTGTTCGGACAGACGATGGTAATCTTCAGCTGGAGGCAACAACTCAATTTCGAAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAAGAGGTTATACAATCTGGTGTAGTTCCTCGCTTTGTAGAGTTTTTGATGAGGGAAGATTTTCCACAGCTGCAGtttGAAGCGGCTTGGGCATTGACAAACATTGCCTCTGGAACATCTGAAAACACTAAGGTGGTAATTGATCAAGGAGCTGTCCCAATTTTTGTCAAACTCCTTGGTTCCCCAAGCGATGATGTTCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCCAGATGCCGTGATCTTGTTCTGAGTCATGGGGCCTTGCTTCCTCTTTTGTCACAGTTGAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACTCTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTAGCCCATCTTATTCATTCAAACGATGAAGAAGTGTTGACGGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGCACAAATGACAAAATTCAAGCCGTGATTGAATCAGGTGTATGTCCCCGGCTTGTTGAGCTTCTACTGCACCCTTCCCCTTCAGTGCTCATTCCTGCTCTTCGTACGGTTGGAAATATTGTTACTGGAGATGACATGCAGACTCAGGTTATCATCAACCATCAAGCTCTTCCATGCCTCTTGAGTCTGTtgactaataattttaaaaaaagcgtCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTAATTGAGGCCAATATCATAGGTCCTCTTGTCCTCCTGCTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCCATCTCAAATTCTACGTCTGGTGGTTCTCATGAACAAATCAAGTACCTGGTTAGTCAGGGGTGTATTAAGCCCTTATGTGATCTTCTCATTTGTCCAGATCCTAGAATTGTGACCGTATGTCTTGAAGGGCTTGAAAACATCTTGAAGGTTGGAGAAGCTGACAAAAGTACGGGTAAAAATGGTGGTGTGAATCTGTATGCCCAAATGATCGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTTCAGAGTCATGACAATACTGAGATCTATGAAAAGGCCATGGAAGATTCGGTTTTGATTAGGAGGAGTCTTGGCTGGTCTGTTGGTGAAGTCGTCCTCCGATGTCTTGTCAATGTGCTTGGGTCCTACGTGGAATCATCGCCTGGGGAATTGAGCGAGGACAAGAAGTACTGTACTGATTGCAAAACCACAAAGACCCCTCTCTGGAGAGGAGGACCAGCTGGACCAAAGAGCCTGTGCAACGCTTGCCGGATTAGATACAGGAAAAAAAGGGCAAGTGTTAGTGTGGTGGGCGGACAATA 1730 0.4566 MSYRPTGNNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQAQQMPASIHSTAVEKKLEHLPNMVAGVRTDDGNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDQGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAHLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIESGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLSLLTNNFKKSVKKEACWTISNITAGNKQQIQAVIEANIIGPLVLLLQNAEFDIKKEAAWAISNSTSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSTGKNGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAMEDSVLIRRSLGWSVGEVVLRCLVNVLGSYVESSPGELSEDKKYCTDCKTTKTPLWRGGPAGPKSLCNACRIRYRKKRASVSVVGGQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03252 576 PIRSF Importin_alpha 6 492 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bva04g03252 576 PANTHER IMPORTIN ALPHA 9 490 - -
Bva04g03252 576 ProSiteProfiles IBB domain profile. 1 61 IPR002652 GO:0006606|GO:0061608
Bva04g03252 576 Gene3D - 14 53 IPR036975 GO:0006606
Bva04g03252 576 Pfam GATA zinc finger 534 567 IPR000679 GO:0006355|GO:0043565
Bva04g03252 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Bva04g03252 576 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 532 567 - -
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 361 398 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 150 189 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Bva04g03252 576 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Bva04g03252 576 SMART GATA_3 528 575 IPR000679 GO:0006355|GO:0043565
Bva04g03252 576 Gene3D - 75 491 IPR011989 -
Bva04g03252 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Bva04g03252 576 Pfam Importin beta binding domain 15 97 IPR002652 GO:0006606|GO:0061608
Bva04g03252 576 ProSitePatterns GATA-type zinc finger domain. 534 559 IPR000679 GO:0006355|GO:0043565
Bva04g03252 576 CDD ZnF_GATA 534 567 IPR000679 GO:0006355|GO:0043565
Bva04g03252 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Bva04g03252 576 SUPERFAMILY ARM repeat 11 490 IPR016024 -
Bva04g03252 576 SMART arm_5 235 274 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 150 190 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 404 444 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 361 401 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 276 316 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 191 233 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 318 359 IPR000225 GO:0005515
Bva04g03252 576 SMART arm_5 107 148 IPR000225 GO:0005515
Bva04g03252 576 ProSiteProfiles GATA-type zinc finger domain profile. 528 564 IPR000679 GO:0006355|GO:0043565
Bva04g03252 576 Pfam Atypical Arm repeat 459 491 IPR032413 -
Bva04g03252 576 Gene3D - 529 572 IPR013088 GO:0006355|GO:0008270
Bva04g03252 576 PANTHER IMPORTIN SUBUNIT ALPHA 9 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03252 Bva-Chr4 26328277 26334136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03252 520 567 C2C2-Gata Transcription Factor Family AT5G49300 64.583 5.10e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva04g03252 IBB 6.6e-22 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03252 K15042 - gmx:100789135 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03252 04 26328277 26334136 Bva13g03256 13 22605391 22610060 BWGD
Bva13g03256 13 22605391 22610060 Bva04g03252 04 26328277 26334136 ECH
Bva05g01311 05 6899698 6903214 Bva04g03252 04 26328277 26334136 ECH
Bva04g03252 04 26328277 26334136 Bva04g03252 04 26328277 26334136 ECH