Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03234 ATGGAAGATTTGTATAGGTTAAACCCTCTTGTATCTTACCCAGATGATGTTGCTAGAGTTAGCAACGTTTCTGCAGCTTCTGCGGCTGCTGCTGCTCAATTGCATCATGGACAGGTAGCCAATAACTATCTCCAGCTCGAACAGGACGACTCCCGGTCGGATATGTCAGATCGGCTGCTCAAGACCCAGATCGCTAATCATCCTCTTTATCCAAATTTAGTATCTGCATACGTAGAATGCCAAAAGGTTGGAGCTCCACCAGAACTGGCGTCCCTTCTCGAAGAAATAGGCCGCGAAAGCCACCCCACTAATATTTGCCGTGAGATAGGGGACGATCCTGAGCTTGACGAGTTCATGGAATCGTACTGCGGAGTTCTTTATAGATACAAAGAGGAGTTATCCAAGCCGTTCAACGAAGCAACCACATTTTTGAACAATATCCAATCTGAACTAAGCAACCTTTGTCAGGGAACATTAACCAAATCATCGGACTATCGCTCAGATGAGGCAGTTGGGACTTCTGAGGAGGAATTAAGTTGTGGGGAGGCAGAAACTCTTGAACGCCGCGAATCTTCTGGCAGTCGTACAGGTGATCAAGAGCTAAAAGAAATGCTCCTTCGCAAGTACAGTGGCTATCTCAGCAGTTTGAGAAAGGAGTTcttaaggaaaaggaaaaagggtaAGCTTCCAAAGGATGCAAGGACGGCGCTAATGAACTGGTGGAACACCCACTACAGATGGCCATATCCTACGGAAGAGGAAAAATTGAAGCTTGCAGAGATAACAGGACTAGATCAAAAGCAAATCAATAACTGGTTCATCAATCAGAGGAAACGGCATTGGAAGCCTTCTGAAGATATGAGATTTGCCATTATGGAGGGCGTAACTGGTGGGAGCACAGGAGGGCCTATGTTCTTTGACTCTGGAAGTGGATCTCATCTTCGTGACATCTG 953 0.4523 MEDLYRLNPLVSYPDDVARVSNVSAASAAAAAQLHHGQVANNYLQLEQDDSRSDMSDRLLKTQIANHPLYPNLVSAYVECQKVGAPPELASLLEEIGRESHPTNICREIGDDPELDEFMESYCGVLYRYKEELSKPFNEATTFLNNIQSELSNLCQGTLTKSSDYRSDEAVGTSEEELSCGEAETLERRESSGSRTGDQELKEMLLRKYSGYLSSLRKEFLRKRKKGKLPKDARTALMNWWNTHYRWPYPTEEEKLKLAEITGLDQKQINNWFINQRKRHWKPSEDMRFAIMEGVTGGSTGGPMFFDSGSGSHLRDI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03234 317 MobiDBLite consensus disorder prediction 166 198 - -
Bva04g03234 317 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Bva04g03234 317 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Bva04g03234 317 Pfam ELK domain 200 221 IPR005539 GO:0003677
Bva04g03234 317 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Bva04g03234 317 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Bva04g03234 317 CDD homeodomain 223 284 IPR001356 GO:0003677
Bva04g03234 317 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Bva04g03234 317 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 294 - -
Bva04g03234 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 294 - -
Bva04g03234 317 Gene3D - 219 290 - -
Bva04g03234 317 MobiDBLite consensus disorder prediction 181 198 - -
Bva04g03234 317 SUPERFAMILY Homeodomain-like 222 291 IPR009057 -
Bva04g03234 317 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Bva04g03234 317 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Bva04g03234 317 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Bva04g03234 317 SMART HOX_1 222 287 IPR001356 GO:0003677
Bva04g03234 317 SMART ELK_2 200 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03234 Bva-Chr4 26253258 26257473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03234 54 297 Homeobox Transcription Factor Family AT1G23380 54.150 6.05e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva04g03234 KNOX2 3.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03234 04 26253258 26257473 Bva13g03235 13 22520343 22523725 BWGD
Bva04g03234 04 26253258 26257473 Bva04g03234 04 26253258 26257473 ECH