Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03227 ATGTCTCTGCGACCGAATTCCCGTACGGATGCGAGGAAGAAATCGTACAAGACGGGGGTGGATGCTGACGAGGCTAGGAGGAGGAGGGAAGACAACCTCGTTGAGATCAGGAAGAACAAGCGCGAGGACAGTCTGCTCAAGAAGAGAAGGGACGGCTTTCTTCTTCAGGCCCAGCAATTGCTCGATGCTTCAAATAATGTTTCTGCGGTACCAGTGGAGAACAGATTGGAAGGTATTCCTGTGATGGTACAAGGTGTATGGTCTGATGATCCTGCTGCACAATTGGAAGCAACTACACAGTTTAGGAAGCTGTTATCAATTGAGCGCAGCCCTCCAATTGATGAGGTCATCCAGGCAGGTGTTGTCCCAAAGTTTGTGGAGTTTTTGGGTAGGCACGATCTACCCCAATTGCAGTTTGAAGCTGCATGGGCTTTGACCAATGTTGCCTCTGGAACATCTGAGCACACAAGAGTGGTCATTGAACAGGGTGCTGTCCCCATGTTTGTACAGCTTCTTAGCTCTAACAGCGATGATGTTAGAGAACAGGCTGTATGGGCTTTAGGTAATGTTGCCGGTGACTCCCCAAGCTGTAGGGATCTTGTTCTTAATCATGGTGCACTTGTGCCATTATTATCTCAGTTGAATCAAAACTCGAAATTATCCATGTTGAGGAATGCTACATGGACTTTATCTAACTTCTGCCGAGGCAAACCTCCAACGCCTTTTGAACAGGTAAGGCCAGCTTTGCCTGTCCTTCGGCAACTCATTTACCTAACGGATGAAGAAGTTCTAACAGATGCATGCTGGGCTCTCTCTTACCTTTCAGATGGcccaaatgaaaaaattcaGGCTGTGATTGAAGCAGGAGTCTGCCCACGACTTGTGGAGCTTCTTCTGCATCCATCACCTACTGTTCTTATTCCTGCTCTTCGGACAGTGGGAAATATAGTTACGGGTGATGACACTCAAACTCAGTTTGTCATTGATAACCAAGCGCTGCCATGCCTTTTCCAACTCCTTAcacaaaatcacaaaaagaGTATCAAGAAAGAAGCTTGTTGGACGATTTCAAATATCACAGCTGGGAATAGAGCTCAAATACAGGCTGTTATTCAGGCCAATATTATACTTCCTCTTGTCAATCTTCTTCAGATTTCTGAATTTGATGTCAAGAAGGAGGCTGCATGGGCTATTTCAAATGCCACTTCTGGCGGATCTCACGAGCAGATCCAGTTTCTGGTAAGTCAAGGTTGCATTAAGCCACTGTGTGATCTTTTAACCTGTCCGGACGCAAGGATTGTGACAGTATGTCTTGAGGGGCTAGAGAACATTCTGAAGGTGGGTGAAGCTGACAAGGAAAGGGGGTTACATGGTGGAGTCAATATTTATGCGCAGATGATTGATGAATGCGAAGGATTGGACAAGATTGAAAACTTGCAGACCCATGACAACAATGAGATTTATGAGAAGGCCGTAAAGCTTTTGGAGAGATATTGGGccgaggaagaagatgatcaGAATCTTCAGAATGGCGGGGAAGGTAATCAACAAGGGTTTTCTTTTGGGACTAACCAGCCCAACCTTCCCCCAGATGGTTTTAACTTTGGATA 1610 0.446 MSLRPNSRTDARKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRRDGFLLQAQQLLDASNNVSAVPVENRLEGIPVMVQGVWSDDPAAQLEATTQFRKLLSIERSPPIDEVIQAGVVPKFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEQGAVPMFVQLLSSNSDDVREQAVWALGNVAGDSPSCRDLVLNHGALVPLLSQLNQNSKLSMLRNATWTLSNFCRGKPPTPFEQVRPALPVLRQLIYLTDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDTQTQFVIDNQALPCLFQLLTQNHKKSIKKEACWTISNITAGNRAQIQAVIQANIILPLVNLLQISEFDVKKEAAWAISNATSGGSHEQIQFLVSQGCIKPLCDLLTCPDARIVTVCLEGLENILKVGEADKERGLHGGVNIYAQMIDECEGLDKIENLQTHDNNEIYEKAVKLLERYWAEEEDDQNLQNGGEGNQQGFSFGTNQPNLPPDGFNFG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03227 536 ProSiteProfiles IBB domain profile. 1 59 IPR002652 GO:0006606|GO:0061608
Bva04g03227 536 MobiDBLite consensus disorder prediction 504 536 - -
Bva04g03227 536 Gene3D - 10 50 IPR036975 GO:0006606
Bva04g03227 536 PANTHER IMPORTIN ALPHA 2 524 - -
Bva04g03227 536 Gene3D - 78 500 IPR011989 -
Bva04g03227 536 PANTHER IMPORTIN SUBUNIT ALPHA 2 524 - -
Bva04g03227 536 MobiDBLite consensus disorder prediction 7 28 - -
Bva04g03227 536 Pfam Importin beta binding domain 12 99 IPR002652 GO:0006606|GO:0061608
Bva04g03227 536 Pfam Atypical Arm repeat 461 508 IPR032413 -
Bva04g03227 536 MobiDBLite consensus disorder prediction 1 28 - -
Bva04g03227 536 PIRSF Importin_alpha 2 535 IPR024931 GO:0005737|GO:0006606|GO:0061608
Bva04g03227 536 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 163 IPR000225 GO:0005515
Bva04g03227 536 SUPERFAMILY ARM repeat 5 503 IPR016024 -
Bva04g03227 536 SMART arm_5 237 276 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 320 361 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 194 235 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 109 150 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 278 318 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 406 446 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 152 192 IPR000225 GO:0005515
Bva04g03227 536 SMART arm_5 363 403 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 323 361 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 407 444 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 279 317 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 364 402 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 248 275 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 194 235 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 153 191 IPR000225 GO:0005515
Bva04g03227 536 Pfam Armadillo/beta-catenin-like repeat 110 150 IPR000225 GO:0005515
Bva04g03227 536 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 205 IPR000225 GO:0005515
Bva04g03227 536 MobiDBLite consensus disorder prediction 509 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03227 Bva-Chr4 26201202 26206212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03227 135 382 U-box Gene Family AT3G46510 23.715 1.99e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03227 K15042 - vvi:100263083 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03227 04 26201202 26206212 Bva04g03227 04 26201202 26206212 ECH