Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03213 ATGCCGTTGGGTAAGTATTACTGCGACTATTGCGATAAGCAATTTCAAGACACTCCAGGTGCTCGAAAACGACATCTTCAAGGTATTCAGCATCTCCGAGCGAAAGCTCTTTGGTACGACTCCTTCAAACTTCAAGATCCCGAGCGATCAGGGAAGGGGGTTTGCAATCGTTTCGTCAAAACGGGTTTTTGCCAGTACGGCGATTCCTGCAAATATTTTCATCCCAAGAACTTGTCCTATGTGAACCCTCAACAAGGAGGAGGACTATTTGATAATACAAAGTCGGCAATGACCATGGGAAATCCTGCACCTGCACCTGGGAATGTTGGAATGTCATGGGGCAACCTACCTCCATCGCTGAAGCCTCCTCCCGACGGTGGATATCTGCCACTTCCCTTCGTCGATTGGGGATA 413 0.4843 MPLGKYYCDYCDKQFQDTPGARKRHLQGIQHLRAKALWYDSFKLQDPERSGKGVCNRFVKTGFCQYGDSCKYFHPKNLSYVNPQQGGGLFDNTKSAMTMGNPAPAPGNVGMSWGNLPPSLKPPPDGGYLPLPFVDWG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03213 137 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Bva04g03213 137 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 76 IPR000571 GO:0046872
Bva04g03213 137 Gene3D - 48 101 - -
Bva04g03213 137 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Bva04g03213 137 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Bva04g03213 137 SUPERFAMILY beta-beta-alpha zinc fingers 4 43 IPR036236 -
Bva04g03213 137 PANTHER NUCLEASE-RELATED 1 137 - -
Bva04g03213 137 Gene3D Classic Zinc Finger 3 47 - -
Bva04g03213 137 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Bva04g03213 137 SUPERFAMILY CCCH zinc finger 52 76 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03213 31 83 C3H Transcription Factor Family AT1G04990 43.396 5.05e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g03213 zf-U1 7.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03213 K13152 - vvi:104881371 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03213 04 26151974 26153188 Bva04g03213 04 26151974 26153188 ECH