Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03212 ATGGCTTCAGTTGGTGTTGCACCAACGTCAGGCTTGAGAGAACCCAGTGGTCATGCAGCAGGTGTTGATAGATTGCCTGAGGAGATGAACGATATGAAAATTAGGGATGATAAAGAAATGGAAGCCACAGTTCTTGATGGTAATGGAACAGAGGCAGGTCATATCATTGTGACCACTATAGGTGGTAGGAATGGTCAGGCGAAGCAGACCATAAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCATTTGGAGTTGTCTTCCAGGCAAAATGCTTGGAGACTGGGGAAGCTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAATAGGGAGCTGCAAACCATGCGTCTTCTTGACCATCCGAATGTTGTCTCCTTGAAgcattgtttcttttcaacaaCTGAAAAGGATGAACTATACCTTAACTTGGTACTTGAGTATGTTCCTGAAACTGTTAATCGTGTGATCAAACATTACAACAAGTTGAATCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGATCTTCAGGGCACTATCCTATATTCACCGCTGTATTGGAGTCTGTCATCGGGATATCAAGCCTCAAAATCTGTTGGTTAATCCACATACGCACCAGGTTAAATTATGTGACTTTGGCAGTGCAAAAGTCTTGGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTACAGAGCACCCGAACTTATATTTGGAGCTACTGAGTATACTACAGCTATTGATATCTGGTCTGCTGGTTGCGTTTTGGCTGAGCTGTTGCTTGGACAGCCGTTGTTTCCTGGTGAGAGTGGGGTTGATCAGCTTGTCGAGATAATCAAGGTTCTGGGTACACCGACAAGGGAGGAGATAAAATGCATGAACCCTAACTATACAGAGTTTAAATTCCCTCAGATTAAAGCTCATCCGTGGCACAAGATTTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTATTGCAATACTCTCCCAACCTACGGTGCACAGCTCTGGATGCATTGACTCACCCTTTCTTTGACGAGCTTCGTGACCCAAATGCACGCTTGCCAAATGGACGTTTCCTTCCTCCATTATTCAACTTTAAATCTCATGAACTGAAGGGAGTTCCGGTTGAGATTCTGCTTAAATTGATTCCAGAGCACGCAAGGAAGCAGTGTCCCTTTCTTGGCTTGTG 1229 0.4312 MASVGVAPTSGLREPSGHAAGVDRLPEEMNDMKIRDDKEMEATVLDGNGTEAGHIIVTTIGGRNGQAKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNARLPNGRFLPPLFNFKSHELKGVPVEILLKLIPEHARKQCPFLGL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03212 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Bva04g03212 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
Bva04g03212 409 CDD STKc_GSK3 68 360 IPR039192 -
Bva04g03212 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Bva04g03212 409 MobiDBLite consensus disorder prediction 1 25 - -
Bva04g03212 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Bva04g03212 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Bva04g03212 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03212 409 SUPERFAMILY Protein kinase-like (PK-like) 72 383 IPR011009 -
Bva04g03212 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03212 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03212 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03212 Bva-Chr4 26147240 26151576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03212 79 385 MAP Kinase Gene Family AT2G43790 34.483 2.29e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Bva04g03212 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03212 K00924 - jre:108987881 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03207 13 22389775 22393700 Bva04g03212 04 26147240 26151576 ECH
Bva04g03212 04 26147240 26151576 Bva04g03212 04 26147240 26151576 ECH