Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03204 ATGGGCGGAGGTGGAGCGACGCCGTATGCGGAGGCGCAGTACATCTCCGCCAAGACGTCCGTCTGGTGGGACATAGAGAACTGCCATGTCCCCAAGGGTTGCGATCCGCACGCCATCGCTCAGAATATAAGCTCCGCTCTCGTTAGGATAAACTATTGTGGGCCCGTCTCCATCTCCGCCTACGGTGATACTACTCGTATTACGGCTTCTGTACAGCAAGCCCTCTCTAGTACCGGAATCTCCCTCAACCATGTCCCCGCTGGTGTCAAGGACGCTAGCGACAAGAAGATTCTGGTGGACATGTTGTTCTGGGCTGTGGACAATCCTGCTCCggctaattatttattaatttctggTGATCGAGACTTCTCTAATGCTCTTCATCAATTGCGGATGAGGAGATATAATATTCTTCTTGCACGACCTCAAAATGCATCTTCACCTCTTGTTGCAGCTGCTAAAAGTGTATGGCTTTGGACTAGTCTCATAGCTGGTGGCCCTCCTCTACCAAATGGCGAATCGCAGCAAGCTAGCAATATTGATAGCTTCCTATCAAGTTCCGATACCTTACAAATTCCAGTCTATAATGACGTTCAGACAAAGCAACACGTGGATTCCTATTCTGAAGTTCATACAGGAAATCAGAGATTTCCACATGCGGGAAGGTCTTTTGAAGCTAGATATCAGGGGAAAACAAACTGGAGAAACTCAAGTCAACCAAATGGAACCAAAGCTTCGAATCTGCCAGTTGGACgtaaagaaaatcataaccATATAAGTTCGCATCGTCCTGGCAACTATAGCCCAAGTGTTTCCCTTAGTGGGTCTGCTCCGAGTTTTGCTCGTGGCAATCACGAACAGATGCGGAGCAATAACAGTAATGTACAGGGCAATTATCAAAATCCTTTTTCACAGGCATTAAGACCTAATGGTCCTCCATTGCATCCTGCTTTTGCACCAGGTGATTCATATCCACCCAATTCCCTTACTTTTCCTACTTCAGTCGTACCTCCTAGGACTGATGCACCCAGTTTCTCCTCAGGACCACCTACAAAAGTGCCCGGTATTAGAAATCTTAACATTTCTGGATATCCCAACAATGTTCATGATCCTCCTATTCAACAACGGAGTGGATACATAAAACAGAATCTTAACAATAATGCTCCACGTCCTGTAAGGTCAATTGAAGAACAAAACGGACATATGGTGCATGGCACACAACCATCATACCCTGGTTACCCTCATGGTCCAGAATGTCCACCCACGTCTATGGCAGCTACGGGCAATAATAATCTTACTGGTAATGGTATATGGGGATCTCCGGGATGTCCTAAACCTTCTGAATATGTCCAAGGCCTTATAGGGGTTGTCTTACTTGCCTTGAACACactaaagaatgaaaagataatGCCAACTGAAGCAAATATAACTGATTGCATCCGATATGGAGATCCCAAACACAGCcatacagatgttaagaaggCTCTGGAGAGTTCTATTGAACAGCAGATGGTGGTGAAACAGAATTTAGGTGCTTTGCAGTTTTATGTTGGGAAGAACGATAAACTTTGGAAGTGTGTAAATCCTATTGGCGGTAATCCTAAGGAGTACTCAAAAGAAACATGggatgaaattcaaaattttttaacatcttcTGCAGGAAGGTCGGCAGTGATGGGTACTCAATGCAAGTACGAAGCAGGTACtgtgttaaaaaatatgtgcTTGAAGGATTTCAGTTTAGGTGATGTACTTCAGATTTTGAACATGGTtattaccaataaaaaatggaTTGTGCATCATCAGACGGGATGGCAACCACTTAAAATTACTCTTCCTGAGACAAACCCCGATCCAGGGGTCATAGTTGGCACATA 1877 0.423 MGGGGATPYAEAQYISAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRINYCGPVSISAYGDTTRITASVQQALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLARPQNASSPLVAAAKSVWLWTSLIAGGPPLPNGESQQASNIDSFLSSSDTLQIPVYNDVQTKQHVDSYSEVHTGNQRFPHAGRSFEARYQGKTNWRNSSQPNGTKASNLPVGRKENHNHISSHRPGNYSPSVSLSGSAPSFARGNHEQMRSNNSNVQGNYQNPFSQALRPNGPPLHPAFAPGDSYPPNSLTFPTSVVPPRTDAPSFSSGPPTKVPGIRNLNISGYPNNVHDPPIQQRSGYIKQNLNNNAPRPVRSIEEQNGHMVHGTQPSYPGYPHGPECPPTSMAATGNNNLTGNGIWGSPGCPKPSEYVQGLIGVVLLALNTLKNEKIMPTEANITDCIRYGDPKHSHTDVKKALESSIEQQMVVKQNLGALQFYVGKNDKLWKCVNPIGGNPKEYSKETWDEIQNFLTSSAGRSAVMGTQCKYEAGTVLKNMCLKDFSLGDVLQILNMVITNKKWIVHHQTGWQPLKITLPETNPDPGVIVGT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03204 625 CDD PIN_limkain_b1_N_like 18 142 - -
Bva04g03204 625 Pfam NYN domain 18 154 IPR021139 GO:0004540
Bva04g03204 625 Pfam OST-HTH Associated domain 562 611 IPR025677 -
Bva04g03204 625 Gene3D - 12 161 - -
Bva04g03204 625 MobiDBLite consensus disorder prediction 231 324 - -
Bva04g03204 625 MobiDBLite consensus disorder prediction 231 254 - -
Bva04g03204 625 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 610 - -
Bva04g03204 625 MobiDBLite consensus disorder prediction 261 307 - -
Bva04g03204 625 PANTHER LIMKAIN B LKAP 2 610 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03204 Bva-Chr4 26096060 26099693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03204 10 202 C2H2 Transcription Factor Family AT5G61190 69.072 3.65e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03204 - - gmx:100794608 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03197 13 22334583 22337383 Bva04g03204 04 26096060 26099693 ECH
Bva04g03204 04 26096060 26099693 Bva04g03204 04 26096060 26099693 ECH