Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03198 ATGCCTCTCTACGAGTTATACCGGCTGTCTAAAGCGAAGCTTCATTCTGAAGAAACAAACACCAAATGTTCACCTGATCAATCTTCTGCACccgaaaatgatttttttgagCTGGTTTGGGAAAATGGCCAAATTTCGATGCAGAGTAATTCCAGCAGAGCTAGAACGAGCCCTATTTCTAGGAGTTTGTCATCTCACTGCTTACCATCTCACAGTCCCAAGGCTCGAGATAAAGATGTAGGATATGGTGGCAATACAAGGATGGGAAAGTTTGGGGATTTGTATTCTGGTTTGAATGGTATTCCAATGTCAGTGCCATCAGACGAAGTGGATTTGAGTCAAGAAGAAGACACGATACCTTGGCTCAATTATTCAATAGATGAACCGTTGCAACACGATTATAGTTCTGATTTCTTGCATGAATTGTCTGGGGTCACTGGAAATGATCTGTCTGcctcaaataattttcctcCAATGGATAAAAGAACTAGTTTTAGTCAGGTTTTGAGGGGCTCTCAAAAAAATTCCGTTTCCGTGCGTGATGTCTCAAATTCAGAACAAGGGAACGTTTCCAAGGGTTCTTCAGcaggagaagttgagaccacTAGACAGAAAGCTAGCACCAGTCAGTTATACACACCATTATGGCAGCAATGTCAAACATCATTCACTTCTGTTAGATCCAGGGTATCGGATGTCACTGAAAATAATACGAGTAATGCCACCCTGCATACACCTTGTGGGGAAATTACTCAGATTCCACATTCCTCTAGTGATTTTTCGGGCTTAAAGATGCCGAAGCAAGATTCAACTACGCCTAGCAATAGTTCCACCGTAATGAATTTCTCCTATTTTGCAAGACCTGCTGCTATAGTGAGATCTAACCTTCAGAGCATTGGTTTGATGCCTGGTTCTTCAGCAAGATCAGAGAATATGGAAAGTAAGAAGAAAGATACCGCTGCTACTAGCAGCAACCCTCCTGAATCAACCCTCGTTGATTCAAGAGGTGAATGTCTAAAAGAATCAACTAGGCAGTGCCAGCAAGTTATGGAGCCTTCCAAGGCTGATTTGAAACCCTTGGGGCCAAAAACTCTTGAACAGAATGCTGCTGCTTCTAAGCAGTCTGATCCTGTCTGTAAAGAGGATGTCTTGAAGAATGATCAAACTTCCAATCTAGTTGTTGCGGAAAGTTCTGCTAAAGAACAGACAGCTGTTGAAAAAAATACGGAGCCTGTTGTAACCTCTTCTTCTATTTGCTCTGGCAATGGTGTGGATAGAGATTCAGACGAtggaaatcaaaatttgaagcGAAAAAGTAGAGATGCTGAGGACTCTGAGTGCCATAGTGAAAATAATGAGCAAGAATCAGTTGGTCTTAAAAAGGTGACCCCTGCACGAACAGGTACGGGTGCCAAGAGAAGCCGTGCTGCTGAAGTGCACAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAACTGCAACAAGGTGGATAAAGCTTCAATGCTTGACGAGGCAATTGAGTATCTTAAAACTCTTCAACTCCAAGTTCAAATTATGTCAATGGCAGCTGGTTTATATATGCCTCCAATGATGTTACCACCTGGAATGCAGCACATGCATGCACATGCACCACATATGACTCCATTTTTACCCATGGGTGTTGGGATGCAAATGGGGCTAGGAATGGGTTATGGCATGGCTATGCCTGACATGAATGGGGGATCTTCCAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCATCTCCCTGTTCCGCCAATGTCTGGACAAACTGCTTTATATGGGATGCCAAGATCAAATCCTCAAGGCTTTATCCTTCCTGGGCAGGGACTTCCCATGCCAATGCCACATGCTCCAATAATTCCTTTGTCATGTGGGCCGCCTATGAACTCACCTGGTCTTGGAATAAATGCCTGTGGAGCAGCAGGACTTATGGAAAATGTGAATTCGGCTTCACCCTCTGGCTTGAAGGATCCACTGCAAGTTATGCAGACCACTGGTTGCAATAATTCGACAAGTCAGATGCCTAAGCAGTGTGAAGCAACAAATCCTGGTAAAGAAGATAGCCCTGTCATTGGTAAATCTTGTTATGATGGTTA 2162 0.4218 MPLYELYRLSKAKLHSEETNTKCSPDQSSAPENDFFELVWENGQISMQSNSSRARTSPISRSLSSHCLPSHSPKARDKDVGYGGNTRMGKFGDLYSGLNGIPMSVPSDEVDLSQEEDTIPWLNYSIDEPLQHDYSSDFLHELSGVTGNDLSASNNFPPMDKRTSFSQVLRGSQKNSVSVRDVSNSEQGNVSKGSSAGEVETTRQKASTSQLYTPLWQQCQTSFTSVRSRVSDVTENNTSNATLHTPCGEITQIPHSSSDFSGLKMPKQDSTTPSNSSTVMNFSYFARPAAIVRSNLQSIGLMPGSSARSENMESKKKDTAATSSNPPESTLVDSRGECLKESTRQCQQVMEPSKADLKPLGPKTLEQNAAASKQSDPVCKEDVLKNDQTSNLVVAESSAKEQTAVEKNTEPVVTSSSICSGNGVDRDSDDGNQNLKRKSRDAEDSECHSENNEQESVGLKKVTPARTGTGAKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMAAGLYMPPMMLPPGMQHMHAHAPHMTPFLPMGVGMQMGLGMGYGMAMPDMNGGSSRFPMIQVPQMQGTHLPVPPMSGQTALYGMPRSNPQGFILPGQGLPMPMPHAPIIPLSCGPPMNSPGLGINACGAAGLMENVNSASPSGLKDPLQVMQTTGCNNSTSQMPKQCEATNPGKEDSPVIGKSCYDG 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03198 720 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 475 524 IPR011598 GO:0046983
Bva04g03198 720 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 536 IPR036638 GO:0046983
Bva04g03198 720 MobiDBLite consensus disorder prediction 690 720 - -
Bva04g03198 720 CDD bHLH_AtPIF_like 475 537 - -
Bva04g03198 720 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 IPR044273 GO:0003700|GO:0006355
Bva04g03198 720 MobiDBLite consensus disorder prediction 150 207 - -
Bva04g03198 720 MobiDBLite consensus disorder prediction 429 455 - -
Bva04g03198 720 MobiDBLite consensus disorder prediction 257 277 - -
Bva04g03198 720 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 - -
Bva04g03198 720 MobiDBLite consensus disorder prediction 302 337 - -
Bva04g03198 720 SMART finulus 481 530 IPR011598 GO:0046983
Bva04g03198 720 Pfam Helix-loop-helix DNA-binding domain 479 525 IPR011598 GO:0046983
Bva04g03198 720 MobiDBLite consensus disorder prediction 47 83 - -
Bva04g03198 720 Gene3D - 470 533 IPR036638 GO:0046983
Bva04g03198 720 MobiDBLite consensus disorder prediction 395 490 - -
Bva04g03198 720 MobiDBLite consensus disorder prediction 47 69 - -
Bva04g03198 720 MobiDBLite consensus disorder prediction 395 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03198 Bva-Chr4 26060782 26065192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03198 362 616 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 49.438 5.35e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g03198 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03198 K12126 - gmx:100794974 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03198 04 26060782 26065192 Bva04g03198 04 26060782 26065192 ECH