Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03196 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTAAGGAAGGGCCTCTGGTCTCCAGAGGAAGATGACAAGCTTTTGAATTATATCACCAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAACTTGCAGGCTTGCAGAGGTGTGGCAAGAGCTGCAGGTTGAGGTGGATAAACTACCTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAATTTGATAATCGAACTCCATGCAGTACTTGGAAACAGATGGTCTCAGATTGCAGCTCAATTACCAGGAAGAACCgacaatgagataaaaaatctATGGAATTCTTCCCTCAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCTCTCTCTGAGGTTGAGAACGACAAGGACAAGCCACCCACAGCCGACAAAAGCAACCAGAAAGCTTCAGTGGGATCCAATGAGCTGAGTCTTGCAGCTGAGCCACCAAAGCTAAAGCCAAGTTCAATGTCAATGTCTGCAGAACGATATCCACTTGAAGTTTCCTCCAGTTCCAGGATCAACAATAGCAACAGTAGCAGCAGCAATTTGACAAACACAACACCCACCCAGGATTTATTCTTAGATAGGTTTGGTACCTGCCATGACAACTCCATGGCCAATTGCAGACCTTCTGATATGGTGGGCTTTTTCCCTTTCCAGCAGTTGAACTATGGAGCAAATATTGGCCTCTCTGCAAATCCCAACACCCCTCTTTGTTTTATACCAAGTTCCAGTTCTTCTCAGGTGATGTCAGACCTTAATTCTAGTATAACTCCTCCTATGCTTCCTTCAGTTACAAGTTCGATATTCTTAACTCCAACACATATTGTCAAGCCAACCGTTAGTCTTCAGTCTAATAATCCTTCTGTATCTTCGGGTCATGACATTGACGGGGTTCATAACTGGGAAGCCAGTACCTTCAGCAACAATGGAAGCAAAAGCAATGGAAGCAATAACAGTATCCAACTACAAAGCAACACTAACTTCCTAGACAGCAACACTTTAACATGGGGTCTGGCGGAGACTGTGAAGGCTGATATTAAAGATAATCATGTATCCTTACAAGGACAAGGAGAACAAGAAGAGATTAAATGGTCTGAATATCTCAACAGTCCTTTCCTGCTTGGAACCTCAGTGCAGAATCAAACCTCTCAATCTATCTACAACGAGGTTAAACCAGAAACAGGCTTTATCACGGACGAGTCAAGTACTACTTGGCACCACAGCCAGCACCAACAAGCTTTCCAAGCTTCAGATATATATACCAAGGATCTTCAAAGATTTTCAGTGGCTTTTGGGCAAACCCTTTA 1352 0.4386 MGRHSCCYKQKLRKGLWSPEEDDKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQRGIDPNTHKPLSEVENDKDKPPTADKSNQKASVGSNELSLAAEPPKLKPSSMSMSAERYPLEVSSSSRINNSNSSSSNLTNTTPTQDLFLDRFGTCHDNSMANCRPSDMVGFFPFQQLNYGANIGLSANPNTPLCFIPSSSSSQVMSDLNSSITPPMLPSVTSSIFLTPTHIVKPTVSLQSNNPSVSSGHDIDGVHNWEASTFSNNGSKSNGSNNSIQLQSNTNFLDSNTLTWGLAETVKADIKDNHVSLQGQGEQEEIKWSEYLNSPFLLGTSVQNQTSQSIYNEVKPETGFITDESSTTWHHSQHQQAFQASDIYTKDLQRFSVAFGQTL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03196 450 Gene3D - 68 148 - -
Bva04g03196 450 CDD SANT 69 112 IPR001005 -
Bva04g03196 450 MobiDBLite consensus disorder prediction 316 334 - -
Bva04g03196 450 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Bva04g03196 450 Gene3D - 11 67 - -
Bva04g03196 450 MobiDBLite consensus disorder prediction 315 334 - -
Bva04g03196 450 CDD SANT 17 61 IPR001005 -
Bva04g03196 450 MobiDBLite consensus disorder prediction 115 143 - -
Bva04g03196 450 MobiDBLite consensus disorder prediction 175 201 - -
Bva04g03196 450 PANTHER HOMEODOMAIN-RELATED 1 443 - -
Bva04g03196 450 SMART sant 13 63 IPR001005 -
Bva04g03196 450 SMART sant 66 114 IPR001005 -
Bva04g03196 450 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva04g03196 450 PANTHER MYB DOMAIN PROTEIN 55 1 443 - -
Bva04g03196 450 MobiDBLite consensus disorder prediction 115 201 - -
Bva04g03196 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva04g03196 450 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva04g03196 450 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Bva04g03196 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva04g03196 450 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03196 Bva-Chr4 26047592 26049747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03196 1 450 MYB Transcription Factor Family AT1G09540 47.835 2.24e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g03196 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03196 K09422 - qsu:112017656 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03196 04 26047592 26049747 Bva13g03184 13 22269576 22271618 BWGD
Bva13g03184 13 22269576 22271618 Bva04g03196 04 26047592 26049747 ECH
Bva04g03196 04 26047592 26049747 Bva04g03196 04 26047592 26049747 ECH