Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03193 ATGGGAATAAAGGGTTTAACAAAGCTTTTAGCCGATAATGCACCAAAATCCATGAAAGAGCTTAAATTTGAAAGCTATTTTGGTCGTAAGATTGCCATTGATGCCAGTATGAGCATCTATCAGTTCCTCATTGTTGTGGGAAGGAGTGGGACTGATATGCTGAAAAATGAGGCTGGTGAAGTTACTAGTCATTTGCAAGGAATGTTTACACGGACAATCAGACTTCTAGAAGCGGGAATTAAGCCTGTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAGGAGCTAGAAAAAcgTTATTCCAAGAGGGCTGACGCAAGCGCGGATTTGACAGACGCCGTGGAGGCTGGAAATAAAGAAGACATTGAAAAATTCAGTAAACGGACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGTAAAAGACTTTTAAGACTTATGGGAGTGCCTGTTATTGAGGCACCCTCAGAAGCAGAGGCACAGTGTGCTGTGCTTTGTAAAGCCGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTACGAGATTTCTTCGCCATTTGATGGATCCTAGCTCAAAAAAAATCCCTGTCATGGAATTCGAAGTTGCTAAGGTTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACTTATGCATCCTCTCTGGGTGTGATTACTGTGATAGCATCCGAGGGATTGGGGGACAAACTGCCTTGAAGCTCATACGCCAACATGGTTCTATAGAGAATATACTGGAGAACATAAACAAAGAGagGTACCAAATACCAGATGATTGGCCCTATCAGCAGGCCCGTCAACTTTTTAAAGAGCCGTTAGTTATAACTGAAGAAGAGCAACTTGATCTTAAGTGGACTGCTCCAGATGAAGAAGGGTTGATTACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGgcaatagaaaaaataaaagcagcaAAGAACAAGTCATCACAGGGACGATTGGAGTCATTTTTTAAGCCAGCAGCAAATCCATCTGCACCCATTAAACGGAAGgaaGTACCAGAGAATACTGCTAAAGGGACAAACAAGAAGACGAAGGCCAGTGGTggtaagaagaagaaata 1148 0.4059 MGIKGLTKLLADNAPKSMKELKFESYFGRKIAIDASMSIYQFLIVVGRSGTDMLKNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGKPPDLKKQELEKRYSKRADASADLTDAVEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAVLCKAGKVYAVASEDMDSLTFGATRFLRHLMDPSSKKIPVMEFEVAKVLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPDDWPYQQARQLFKEPLVITEEEQLDLKWTAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSAPIKRKEVPENTAKGTNKKTKASGGKKKK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03193 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Bva04g03193 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 352 IPR036279 -
Bva04g03193 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Bva04g03193 382 CDD PIN_FEN1 4 332 - -
Bva04g03193 382 PANTHER FLAP ENDONUCLEASE 1 1 375 - -
Bva04g03193 382 MobiDBLite consensus disorder prediction 334 382 - -
Bva04g03193 382 CDD H3TH_FEN1-Euk 222 290 - -
Bva04g03193 382 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Bva04g03193 382 SMART 53exo3 29 299 IPR002421 GO:0003677
Bva04g03193 382 SMART xpgn3 1 108 IPR006085 GO:0004518
Bva04g03193 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Bva04g03193 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Bva04g03193 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Bva04g03193 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Bva04g03193 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Bva04g03193 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 375 IPR006084 -
Bva04g03193 382 Gene3D - 10 222 - -
Bva04g03193 382 Gene3D - 223 286 - -
Bva04g03193 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Bva04g03193 382 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Bva04g03193 382 SMART xpgineu 147 219 IPR006086 GO:0004518
Bva04g03193 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Bva04g03193 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03193 Bva-Chr4 26027627 26032366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03193 1 359 Core DNA Replication Machinery Family AT5G26680 87.187 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03193 K04799 - jre:109008307 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03193 04 26027627 26032366 Bva04g03193 04 26027627 26032366 ECH