Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03186 ATGGCTTCTATTACAGGTGTTTCTTCAATACTCCAGACTCCGGCTCTTGAACCATATAAAAGGGCTACCACAACGGGTACTACGAATTCTGTTTCGCTGCAATTATCAGATAACAAGTCCCACTTTAACGACGTTCTaagagctcatcttaggaacAATTGTACTGGCAACTTCAAGAGTGGGTTTAAACCGAGATTTAGTTTTGTTCCTTCGGCTATTGCCACACCCAATTCTTCCCTTTTGAGTGAAGAAGCATTCAAGAGTATAATAGGAGGTGGATTCTCCGATGATGACTCTTTGGGTGATGTTAGCGGAAACGAGGATTATGACTATGAGTCTGAAACTGGGGCCTCTGCTGTTGCTACTGAGGACGAGCTCGACATTTCCAATCTGAGTTTGCCTCAGCGCCTCGTGGATGCACTTAACAAACGCGGGATTACTCATCTTTTCCCTATTCAGAGAGCTGTGTTAGTACCTGCACTAGAAGGTCGAGATCTTATTGCTCGTGCAAAGACTGGGACTGGGAAGACATTAGCCTTTGGGATTCCAATTATAAAACGCCTCAGTGAAGATGAACGGAGTTCTCAGAGGAGGTCCGGTCGCCTTCCTAAAGTATTGGTTCTTGCACCTACCAGGGAGCTAGCAAAGCAAGTAGAGAAAGAGATTAAAGAATCTGCACCCTATCTAAACACAGTTTGTGTTTATGGGGGTGTTTCTTACGTTACACAACAAAGTGCACTTTCACGTGGTGTTGATGTGGTGGTTGGAACTCCTGGTAGAATAATTGACCTAATAAATGGGAATAGCCTTAAACTAAGTGAAGTTGAGTTTTTAGTCCTTGATGAAGCCGATCAAATGCTTGCTGTCGGGTTTGAAGAGGATGTAGAAGTGATTTTACAGAAGCTTCCATCTGAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCCGGTTGGGTGAAGAAATTGGCGAGAAAATATTTGGATAATCCATTGACCATTGATTTGgttggagaaaaagaagaaaagcttgCAGAAGGGATCAAAATTTATGCTCTATCAGCCACAACCTCTTCAAAGCGGACAATTCTTTCTGATCTTATAACAGTTTATGCAAAGGGTGGGAAGACCATCGTCTTTACACAGACAAAAAGAGATGCTGATGAAGTCTCATTGGCATTAACAAATAGCTTAGCTTCTGAGGCACTGCATGGTGATATATCACAGCATCAGAGAGAGAGAACGTTGAATGGTTTTCGGCAAGGGAAATTCACAGTACTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGACATTCCCAATGTTGATTTGGTCATCCACTATGAGCTTCCCAATGATCCTGAGACTTTTGTACACCGCTCTGGTCGCACTGGACGTGCAGGAAAAGAAGGTAGTGCAATTCTGATGTATACCAGCAGCCAGAGGAGAACAGTTAGATCACTTGAGCGTGATGTAGGGtgcaaatttgaatttatcacTCCACCATCTATAAACGAGGTTTTGGAGGCATCTGCTCAGCATGTGGTTGCCACACTTAACAGAGTTCATCCTGAGTCTCTTGAATTTTTCACCGCAACTGCACAAAAACTAGTTGAAGAACAAGGAGCAACTGCCCTTGCAGCTGCACTAGCACATCTGAGTGGATTCTCGCGACCTCCCTCATCACGGTCTCTTATAAACCATGAGCAGGGTTGGATTACATTGCAACTGACTCGGGATCCGGACAATTCTAGAGGATTCTTCTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCGGCTGATGAAGTTGGAAAGATACATATAATTGCGGACGAAACGGTTCAAGGAGCAGTTTTTGATCTTCCAGAGGACATCGCTAAAGAGTTATTGAATAAGGAAATACCGCCTGGGAACACTATTTCCAAGATCAGCAAGTTGCCTCCCTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTCTCTGATAGAGAAAGAAGTAGGCGGGGAGGTTCTAGGGATCAGAGAAGTTCTAGAAACCCCCGGGGATGGGGTGGAGGCCGAAACTCAGATGATGattttgataattcatttAGGAGAGGTGGTCGAAGTTATAAAGATGGCAACAGCCGGTCTCAAGCGGCAAGAAGCAGCAAGGATGATTGGCTAATTGGAAGTAGACGATCAAGCAGGTCTTCATCAGACAGGAGCTTCGGAGGGTCCTGTTTTATTTGTGGGCAATCTGGTCATCGAGCATCAGACTGTCCTAACAAGTCCcgttttta 2300 0.4326 MASITGVSSILQTPALEPYKRATTTGTTNSVSLQLSDNKSHFNDVLRAHLRNNCTGNFKSGFKPRFSFVPSAIATPNSSLLSEEAFKSIIGGGFSDDDSLGDVSGNEDYDYESETGASAVATEDELDISNLSLPQRLVDALNKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDERSSQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVEFLVLDEADQMLAVGFEEDVEVILQKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGEKEEKLAEGIKIYALSATTSSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSLASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMYTSSQRRTVRSLERDVGCKFEFITPPSINEVLEASAQHVVATLNRVHPESLEFFTATAQKLVEEQGATALAAALAHLSGFSRPPSSRSLINHEQGWITLQLTRDPDNSRGFFSARSVTGFLSDVYSPAADEVGKIHIIADETVQGAVFDLPEDIAKELLNKEIPPGNTISKISKLPPLQDDGPPSDFYGKFSDRERSRRGGSRDQRSSRNPRGWGGGRNSDDDFDNSFRRGGRSYKDGNSRSQAARSSKDDWLIGSRRSSRSSSDRSFGGSCFICGQSGHRASDCPNKSRF 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03186 766 Pfam DEAD/DEAH box helicase 150 322 IPR011545 GO:0003676|GO:0005524
Bva04g03186 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 507 IPR001650 -
Bva04g03186 766 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 67 758 - -
Bva04g03186 766 MobiDBLite consensus disorder prediction 691 711 - -
Bva04g03186 766 Gene3D - 347 549 IPR027417 -
Bva04g03186 766 MobiDBLite consensus disorder prediction 732 746 - -
Bva04g03186 766 MobiDBLite consensus disorder prediction 662 681 - -
Bva04g03186 766 Pfam Zinc knuckle 746 762 IPR001878 GO:0003676|GO:0008270
Bva04g03186 766 MobiDBLite consensus disorder prediction 640 766 - -
Bva04g03186 766 CDD GUCT_Hera 561 641 - -
Bva04g03186 766 Pfam GUCT (NUC152) domain 554 654 IPR012562 GO:0003723|GO:0004386|GO:0005524
Bva04g03186 766 PANTHER - 67 758 - -
Bva04g03186 766 SMART c2hcfinal6 746 762 IPR001878 GO:0003676|GO:0008270
Bva04g03186 766 Gene3D - 714 765 - -
Bva04g03186 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Bva04g03186 766 SMART helicmild6 387 467 IPR001650 -
Bva04g03186 766 ProSiteProfiles Zinc finger CCHC-type profile. 747 762 IPR001878 GO:0003676|GO:0008270
Bva04g03186 766 SMART ultradead3 145 350 IPR014001 -
Bva04g03186 766 Pfam Helicase conserved C-terminal domain 359 467 IPR001650 -
Bva04g03186 766 CDD DEADc 137 334 - -
Bva04g03186 766 Gene3D - 127 337 IPR027417 -
Bva04g03186 766 CDD SF2_C_DEAD 359 476 - -
Bva04g03186 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 488 IPR027417 -
Bva04g03186 766 SUPERFAMILY Retrovirus zinc finger-like domains 734 765 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03186 Bva-Chr4 25992796 25997911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03186 152 489 Eukaryotic Initiation Factors Gene Family AT1G72730 38.329 9.11e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03186 - - vra:106757668 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03186 04 25992796 25997911 Bva13g03171 13 22202727 22207643 BWGD
Bva13g03171 13 22202727 22207643 Bva04g03186 04 25992796 25997911 ECH
Bva04g03186 04 25992796 25997911 Bva04g03186 04 25992796 25997911 ECH