Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03178 atggaaaGGTTAGTATACACTAGTCTAACATTGTTGGTGGGGTTCTTCTCCAAAGAACTTAGAATGGCATCGGCGAAAGGTTGGCTGAAAGCTCATGCAACATTCTATGAGGGAGCAATGGGGGGTGCATGTGGTTACGAAAATGTATTTGCGGAAGGTTTTGGTATAAACACAGCAGCCTTGAGTGATGCTTTATTCAATCACGGCAAGTCATGCGGCGGGTGCTATCAGATTGTTTGTGACGCAACCCAAGTGCCACAATGGTGCAAAAAGGGTAAGCGCATCACAGTTACTGCCACAAACTTCTGTCCACCAAACTACAATTTACCTAATGACGATGGCGGTTGGTGCAATCCTCCAAGACCACACTTCGACATGTCTCAACCTGCATTTGAGACCATCGCCGAGTACAAGGCTGGAATTGTACCAATTTTCTATAGGAAAGTAATGTGCAGAAGAAATGGAGGCCTCAGATTCACAATCAATGGAAACGACTATTTTGAGTTAGTGTTTATAAGCAATGTGGGTGGATATGGAGATATCTCCCAAGTTTGGATCAAAGGATCGAAGATGAAAAAATGGGAAGCCATGTCAAGGAATTGGGGTGTGAACTGGCAGAGCCCAAGCTATCTGAATGGTCAGAGCTTGTCCTTCAGAGTCCAACTCGCTAACCGAAAGATTCGCACAGCTTATGATGTGGCACCTTCTGACTGGAATTTTGGCCAGACCTTCCAGACCCAGATGCAGTTCTG 752 0.4508 MERLVYTSLTLLVGFFSKELRMASAKGWLKAHATFYEGAMGGACGYENVFAEGFGINTAALSDALFNHGKSCGGCYQIVCDATQVPQWCKKGKRITVTATNFCPPNYNLPNDDGGWCNPPRPHFDMSQPAFETIAEYKAGIVPIFYRKVMCRRNGGLRFTINGNDYFELVFISNVGGYGDISQVWIKGSKMKKWEAMSRNWGVNWQSPSYLNGQSLSFRVQLANRKIRTAYDVAPSDWNFGQTFQTQMQF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03178 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Bva04g03178 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 156 IPR007112 -
Bva04g03178 250 PANTHER EXPANSIN 6 250 - -
Bva04g03178 250 SMART dpbb_1 58 146 IPR007112 -
Bva04g03178 250 Gene3D - 154 250 IPR036749 -
Bva04g03178 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Bva04g03178 250 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Bva04g03178 250 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Bva04g03178 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Bva04g03178 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Bva04g03178 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Bva04g03178 250 SUPERFAMILY Barwin-like endoglucanases 22 174 IPR036908 -
Bva04g03178 250 PANTHER EXPANSIN-A15 6 250 IPR002963 GO:0009664
Bva04g03178 250 Gene3D - 16 152 IPR036908 -
Bva04g03178 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 246 IPR007117 -
Bva04g03178 250 Pfam Lytic transglycolase 58 146 IPR009009 -
Bva04g03178 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Bva04g03178 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03178 Bva-Chr4 25950668 25951630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03178 25 250 Expansin Gene Family AT4G01630 69.264 2.12e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03178 - - gmx:100813434 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03178 04 25950668 25951630 Bva13g03162 13 22148617 22149582 BWGD