Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03173 ATGGCGTTTTCATTCTCAATGCAGTTAGTGCAAAGTCAGAACCTGCGTCCCCATTTTTACCATTTCCAGGGTAGTCAAAGCCAAGATGAATCTAAGGTTCGAAGGCCACATGTGATCTGTAGCAGTACCAGATCACTGCTTGGTTACTCTCATACTCCAATTTCTTGCCAGACCACTAAAACATTGGCATCAAGATCTCATTACGCCTCAAGTTTTTCTGCCGTAAACCCATCGGTTACAAAATCAGTTACTTATAGGAGAATGACATGTGTCAATGCTACGGAAAATGTTGTAGAGCTGCAGGCAAAAGTGACAAACAAATGTTTCTTTGATGTAGAAACTGGGGGGCAACCTGCAGGCAGAATTGTATTGGGCCTATTTGGAGAGGTTGTTCCTAAAACCGTAGAGAATTTCCGTGCGCTTTGCACAGGAGAAAAAGGATATGGTTACAAAGGTTGCTCCTTCCATCGCATAATCAAAGACTTTATGATTCAGGGAGGAGATTTCACTGAAGGAAATGGAACTGGAGGAATCAGTATTTATGGTTCTAGATTCGAAGATGAGAATTTTTCCTTGAAGCATGTTGGTCCAGGAGTCTTGAGTATGGCGAATGCAGGCCCTAATACCAATGGTAgtcaatttttcatttgtacCGTAAAGACTCCATGGCTGGACAATCGCCACGTCGTGTTTGGGCAAGTCATTGATGGAATGGATGTTGTGAAGACGCTTGAATCTCAGGAGACAAGCAGGATGGATATCCCTCGGAAGCCTTGCAGAATTGTTAATTGTGGAGAACTGCCTTTGGATGGCTG 815 0.427 MAFSFSMQLVQSQNLRPHFYHFQGSQSQDESKVRRPHVICSSTRSLLGYSHTPISCQTTKTLASRSHYASSFSAVNPSVTKSVTYRRMTCVNATENVVELQAKVTNKCFFDVETGGQPAGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGNGTGGISIYGSRFEDENFSLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGQVIDGMDVVKTLESQETSRMDIPRKPCRIVNCGELPLDG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03173 271 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 266 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 109 265 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 150 167 IPR020892 GO:0003755|GO:0006457
Bva04g03173 271 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 225 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 167 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 198 213 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 226 241 IPR002130 GO:0000413|GO:0003755
Bva04g03173 271 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 62 270 - -
Bva04g03173 271 Gene3D - 92 270 IPR029000 -
Bva04g03173 271 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 62 270 - -
Bva04g03173 271 SUPERFAMILY Cyclophilin-like 102 267 IPR029000 -
Bva04g03173 271 CDD cyclophilin_ABH_like 107 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03173 Bva-Chr4 25929128 25932377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03173 25 264 U-box Gene Family AT5G67530 33.333 2.06e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03173 K03768 - gmx:100785805 407.912