Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03166 ATGGCTGAGAAGATGCCCGACTCAACCCGGCCAAGGGTGACTAGTAGCTCCTACCATCCAACCTCCATGAATGGCAACGAATTTGCGGAGCTGGTATGGCAAAATGGTCAAATTCTTGTGCAAAGAGGGGGTACATCAAGTAACAGACAAAAGGGTTCCTCGTGCATTGGATATTCAGAAAGCCCTTCTCATGATATAGGTTATGAGGAAGACGTCTGCATTACAAAAAGAGCAAGGTTAAACACTTACTGCTCGCTCTTCCCTGCAAGTCACAAGAACTTTGACATGGGCTCTACACATCGAGAGTCACAACAAAGCAATGTCCATCAGTGCTATCAATTTGATTTGCCATACGCCAAAAGCAAGAACTCCTTTAAGAATTTTGATACCCATTTGATGGTGGAAGATGAATGTCCAGACTTTAGAAGAGCAAAAGAATCTAAGTTTAATGGTGGAGCTTATCAGCTAACTTCTTTTGGGAACAGTGAATTTTGCTCATCTTCCTCGCAGCAATGCCCAGCTTCAGCTTCGTTCATGACACCAAGAATACCGACTCCCAGCTCACAGAAACAGGACTTAAGAACTGTAGAAAAGGTTAATTTCCCCAACTTCGTAAGACCCACAGAGTTTTTCAAATCTACTAACCAGAGCAATAGAGCAACCCAGCAGACAAGCAGCGTTGTTTTAGCCGGAGTTAAGGaaattaaaacaagtaaaGATGATAACAACTCAGTTGCAGTTACCACTAGTAAAGCTCCTGAGCATTCTATCTCATCAAATAAAGGTTCACATAGTCTCAAACAGAAGCCAACAGCTACTAATGCAAACCAAGTACCCTCGGTTGCAAACTCTTCTCGGGAACCTCTTCCTCATGAGCGTTCTAAAGCTATGCGGAATAACAGTGCCTTCAGGATTCACGGATGCCAAGACTCCAGCTTAGCAGTAAATGGAGCAAAGGGAAAAACTGATACTTACCAACAGTTGGTTCCATCTTCTTCTGTATGCTCGCTTGGAGCCTCAAATGACCCAACATATTTGAGCACAAAACATGAGGTTGAAGACACCTACTACTCGGCGTATTCAAGTGAGaatgatgaagaagaagaaggtttAACAGAAGAAGAACGTCCTCCGGAGGGTGCAAGAGGCAAGAGAAGCAGGACAGCGGAGATTCGTAATCTATCTGAAAGGAAACGAAGAGATAAGTTCAACAAGAAGATGCGTGCATTAAAAGAGCTTATACCCAATTGCAACAAGATGGACAAAGCTTCAATGCTTGACGATGCCATTGAACATCTCAAGACACTTAAGCTTCAATTACAGATTATGTCGCTGGGAACGGGGATGTGTATGCCATTCATGATGTTACCTGCTGGTGCCAATCATCTAAATCCACTGCATTTAACTCAGTTCCCTCAATTGGGAACCGGAATAGGTTTAAGGCCAAGCACAGTAACACCTTGTAATCTACCAGCTCAGTTCCCTCCTCCACAACTAGGACCTGCTTCTCTGCCTGGAATCACAGATAACGGACTTCCGATACCTGCAGGTTTCCCCAGTCAGATTCTACCCATCTCAATTCCTCATGCACCTTTCTTTCCTATGCTTGGAAAGCCTTTTACACAACCAGTTCTCCCAACCAGTACTCCATCCAACCTCGCCCACCATCTTGCTTCTTCCCCCTTACCCACTTTAAATGACTCAATTCCCAACAAAGCAGAACTTAATGCACAGCCTGAATGTCCTTATGTccaatataaata 1763 0.4311 MAEKMPDSTRPRVTSSSYHPTSMNGNEFAELVWQNGQILVQRGGTSSNRQKGSSCIGYSESPSHDIGYEEDVCITKRARLNTYCSLFPASHKNFDMGSTHRESQQSNVHQCYQFDLPYAKSKNSFKNFDTHLMVEDECPDFRRAKESKFNGGAYQLTSFGNSEFCSSSSQQCPASASFMTPRIPTPSSQKQDLRTVEKVNFPNFVRPTEFFKSTNQSNRATQQTSSVVLAGVKEIKTSKDDNNSVAVTTSKAPEHSISSNKGSHSLKQKPTATNANQVPSVANSSREPLPHERSKAMRNNSAFRIHGCQDSSLAVNGAKGKTDTYQQLVPSSSVCSLGASNDPTYLSTKHEVEDTYYSAYSSENDEEEEGLTEEERPPEGARGKRSRTAEIRNLSERKRRDKFNKKMRALKELIPNCNKMDKASMLDDAIEHLKTLKLQLQIMSLGTGMCMPFMMLPAGANHLNPLHLTQFPQLGTGIGLRPSTVTPCNLPAQFPPPQLGPASLPGITDNGLPIPAGFPSQILPISIPHAPFFPMLGKPFTQPVLPTSTPSNLAHHLASSPLPTLNDSIPNKAELNAQPECPYVQYK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03166 587 Gene3D - 383 444 IPR036638 GO:0046983
Bva04g03166 587 MobiDBLite consensus disorder prediction 360 400 - -
Bva04g03166 587 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 447 IPR036638 GO:0046983
Bva04g03166 587 MobiDBLite consensus disorder prediction 241 284 - -
Bva04g03166 587 MobiDBLite consensus disorder prediction 239 293 - -
Bva04g03166 587 CDD bHLH_AtPIF_like 387 449 - -
Bva04g03166 587 Pfam Helix-loop-helix DNA-binding domain 392 436 IPR011598 GO:0046983
Bva04g03166 587 PANTHER TRANSCRIPTION FACTOR PIF3 21 572 IPR044273 GO:0003700|GO:0006355
Bva04g03166 587 SMART finulus 393 442 IPR011598 GO:0046983
Bva04g03166 587 MobiDBLite consensus disorder prediction 360 374 - -
Bva04g03166 587 PANTHER TRANSCRIPTION FACTOR PIF3-LIKE 21 572 - -
Bva04g03166 587 MobiDBLite consensus disorder prediction 375 400 - -
Bva04g03166 587 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g03166 587 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 387 436 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03166 Bva-Chr4 25887224 25890073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03166 331 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 39.556 2.33e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g03166 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03166 K12126 - jre:109007770 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03166 04 25887224 25890073 Bva13g03148 13 22081796 22084565 BWGD