Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03162 ATGGGCAAAGCCTCTagttcttcctcttcttcttttagtAGCACCAACCAAACCAATTCCTCTCTCACGCACCAAAACTGGGGCCTTCCTATAGATCTTAGGCTTGAACTTGGCATTTCTGCTACTCAACAAGTTGGCTCTTCCTTTTCGAGGGGGGAGGCATCAGAGTGGGCACCAACCCAGCGGCCACTTGCTGCAGCTGAAATACATGATTGCAATGATCATAACAGATTCTTCGTGAAGGTCTACATGGAAGGCATTCCTATTGGGAGAAAACTTGATGTACTTGCTCACGATGGCTACCATGAGTTAGTGAAGACTCTTGAACACATGTTTGACACTACCATTCTCTGGGGAACTAAGATGGACGGAGTGCAACCAGAGAGATGTCATGTGCTAACTTACGAAGACGAAGAAGGGGACTTCTTGATGGTTGGGGATGTTCCTTGGGAAATGTTTTTATCCACCGTAAAGAGACTGAAAATCACCAGAATAGAGACATTTGGAAGTTG 512 0.4395 MGKASSSSSSSFSSTNQTNSSLTHQNWGLPIDLRLELGISATQQVGSSFSRGEASEWAPTQRPLAAAEIHDCNDHNRFFVKVYMEGIPIGRKLDVLAHDGYHELVKTLEHMFDTTILWGTKMDGVQPERCHVLTYEDEEGDFLMVGDVPWEMFLSTVKRLKITRIETFGS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03162 170 SUPERFAMILY CAD & PB1 domains 70 164 - -
Bva04g03162 170 Pfam AUX/IAA family 72 164 IPR033389 -
Bva04g03162 170 ProSiteProfiles PB1 domain profile. 77 170 IPR000270 GO:0005515
Bva04g03162 170 Gene3D - 71 169 - -
Bva04g03162 170 PANTHER AUXIN-INDUCED PROTEIN 4 169 - -
Bva04g03162 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 169 IPR003311 GO:0005634|GO:0006355
Bva04g03162 170 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03162 Bva-Chr4 25873064 25873898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03162 77 162 B3 DNA Binding Superfamily AT4G23980 39.535 4.45e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva04g03162 AUX_IAA 7.7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03162 K14484 - gmx:100818376 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03162 04 25873064 25873898 Bva13g03144 13 22060474 22061593 BWGD