Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03146 aTGGCAGGGAATGTGATAGTCCCCGCCTTCTCACTCATCCTTGTGGTGGGTGTCGCTCTCGGTGTTGTCGCCGTGGTTCACTTCAATAATAAAGATGATGACCCTAGGATAACAGGTAATGTTAAGGCTGTCCAAAGCATTTGTGAGCACGCAGAGGACCAGAAACTCTGCCATGAAACTCTTGTCCCCTCCAAGGGATCTCAAGACCCAAAAGAATACTACAAGACCGCAGTGGAAACAACCATTAATAGCGTGATCAAGTCCCTAAATATGACTAATAAGCTCTCCGTGGAGCACGGGAACAAGGACAAAGGCATCAAGATGGCCCTTGATGACTGCAAGGAAATGTTGGACTTGGCCATCGACAGCCTCGAAGCTTCGGCTAAATTGGTCCGTGAGAATGACATCCAAGCTATTTATAACAACACCGCTGACTTCACGAATTGGCTGAGTGCTACTATATCCTACCATCAAACTTGCATGGACAGTTTTGACACAGACGGTGAGAAGAAGGTGCGAGAACAATTGCAGTCCAATGGTTTGAACGATATGGGAAAACTCACTGGCATGACACTTGACATTGTCTCCGACTTGTCCAAGATTCTTGAGTCATTCCATTTGAAATTGAACGTGAAGCCAGCATCAACTGATTCTCGTCGACGTCTTCTTAGCGTTAATGTGGATAGCCAAGggttccccacatggttttcAGCTGCTGATCGAAAGCTCATGGCTCAGTTACAAAAGAAAGGTGGACATCATCTAAGAATCACGCCCAACGTAGTTGTTGCCCAAGATGGCAGTGGCACTCATAAGAGCATTGCTGATGCTATAGCTGCTGTTCCTAAGAACTCAAACAACAGATTCGTTATCTATGTTAAGGCTGGAGTCTACAAGGAGTACGTTACCGTTCCCAAAGATGCCACGAGAGTGTTAATGTACGGTGATGGCCCTACAAGGACCATCATCACTGGAAACAAGAACTACGCGGCTGGCACCAAGACAATGGAAACCGCTACCTTTTCCGTTATTGGACAATGGTTCATTGCCAAGTCAATGAGATTCGAGAACACTGCTGGGTGGGCTGGGCACCAAGCCGTGGCACTTCGTGTGTCTAGTGATATGTCTGCTTTCTTTGACTGTGGAATTCATGGTTACCAAGACACCTTGTACGTTCATGCCAATCGTCAGTTCTACCGCAATTGTGAAATCTCTGGTACCATCGACTTCATCTTCGGCCACTCAAGGACAATTATTCAAAACTCTAAGATCATTGTGAGGAAGCCAGGCCCATCTCAATTTAACACAGTGACAGCAGACGGCACAGAGAGGACGAAGGAGAATACTGGTATTGTGATCCAAAATTGTGAGATCCTTCCAGAAAAGGAACTATACCCTGAAAGGTTCCAAGTGAAATCGTACTTGGGAAGGCCATGGAAGGCATCCTCAACGACAGTGGTTATGGAATCTACCATTGGTGACTTCGTTCAGCCAGACGGATGGACTCCATGGGATGGAAACATCTACCTTGACACCTTGTACTATGCTGAGTATAACAACAGGGGACCTGGTGCTGCCCTAGACCGAAGGGTTAAATGGAAGGGTTACCGTGGAGCAATTAGTAAAGATGAAGCTGCCCGGTTCATTCCTGGTGCATTCCTCGAGGCTGGCCCATCCGGAAAATTGTATTGGTTGAAGGCTACTGGAATTCCTTACCAGATTGGCTTCATTGcatcttg 1739 0.46 MAGNVIVPAFSLILVVGVALGVVAVVHFNNKDDDPRITGNVKAVQSICEHAEDQKLCHETLVPSKGSQDPKEYYKTAVETTINSVIKSLNMTNKLSVEHGNKDKGIKMALDDCKEMLDLAIDSLEASAKLVRENDIQAIYNNTADFTNWLSATISYHQTCMDSFDTDGEKKVREQLQSNGLNDMGKLTGMTLDIVSDLSKILESFHLKLNVKPASTDSRRRLLSVNVDSQGFPTWFSAADRKLMAQLQKKGGHHLRITPNVVVAQDGSGTHKSIADAIAAVPKNSNNRFVIYVKAGVYKEYVTVPKDATRVLMYGDGPTRTIITGNKNYAAGTKTMETATFSVIGQWFIAKSMRFENTAGWAGHQAVALRVSSDMSAFFDCGIHGYQDTLYVHANRQFYRNCEISGTIDFIFGHSRTIIQNSKIIVRKPGPSQFNTVTADGTERTKENTGIVIQNCEILPEKELYPERFQVKSYLGRPWKASSTTVVMESTIGDFVQPDGWTPWDGNIYLDTLYYAEYNNRGPGAALDRRVKWKGYRGAISKDEAARFIPGAFLEAGPSGKLYWLKATGIPYQIGFIAS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03146 579 CDD PMEI-like_3 46 200 - -
Bva04g03146 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 199 IPR035513 -
Bva04g03146 579 Pfam Pectinesterase 260 555 IPR000070 GO:0030599|GO:0042545
Bva04g03146 579 Pfam Plant invertase/pectin methylesterase inhibitor 43 194 IPR006501 GO:0004857
Bva04g03146 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 200 IPR035513 -
Bva04g03146 579 SUPERFAMILY Pectin lyase-like 258 574 IPR011050 -
Bva04g03146 579 SMART PMEI_2 39 194 IPR006501 GO:0004857
Bva04g03146 579 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Bva04g03146 579 Gene3D - 254 576 IPR012334 -
Bva04g03146 579 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Bva04g03146 579 PANTHER PECTINESTERASE 7 577 - -
Bva04g03146 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 37 195 IPR006501 GO:0004857
Bva04g03146 579 PANTHER PECTINESTERASE 7 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03146 Bva-Chr4 25782907 25788577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03146 6 578 Carbohydrate Esterase AT3G05610 39.033 7.38e-144 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03146 K01051 - gmx:100789650 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03146 04 25782907 25788577 Bva13g03126 13 21971966 21978119 BWGD
Bva13g03127 13 21977607 21979501 Bva04g03146 04 25782907 25788577 BWGD