Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva04g03145 | aTGGCAGGAAATGTGATAGTCCCCGCCGTCTCACTCATCCTTCTGGTGGGTGTCGCTCTCGGCGTTGACCCTAGCACAACAGGTAATGTTAAGGCTGTCCAAGGCATTTGTGAGAACGCAGAGGACCAGAAACTCTGCCATGAAACTCTTGCCCTCTCCAACGGATCTCAAGACCTAAAAGAATACTTAAAGGTCGCAGTGGAAACAACCATTAATAGCGTGATCAAGTCCATAAATATGACCGATAAGCTCTCCGTGGAGCACGGGGACAAAGACAAAGGCATCAAGATGGCCCTTGATATCTGCAAGGAAATGTTGGACTTGGCCATGGACAGCCTCGAAGCTTCGGCTAAATTGGTCCGTGAGAATGACATCCAAGCTATTTATAACAGCACCGCTGACTTCACGAATTGGCTGACTTCTACCATCGCTGACCAACAAACTTGCATGGACAGTTTTGACACAGACGGTGAGAAGAAGGTGCGAGAACAATTGCAGTCCAATGGTTTGAACGATATGGAAAAACTCGCTGGCATGACACTTGACATTGTCTCCGCCTTGTCCAAGATTCTTGAGTCATTCCACTTGAACGTGAAGCCAGCATCAACTGATTCTCGTTG | 620 | 0.4774 | MAGNVIVPAVSLILLVGVALGVDPSTTGNVKAVQGICENAEDQKLCHETLALSNGSQDLKEYLKVAVETTINSVIKSINMTDKLSVEHGDKDKGIKMALDICKEMLDLAMDSLEASAKLVRENDIQAIYNSTADFTNWLTSTIADQQTCMDSFDTDGEKKVREQLQSNGLNDMEKLAGMTLDIVSALSKILESFHLNVKPASTDSR | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva04g03145 | 206 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 183 | IPR006501 | GO:0004857 | |
| Bva04g03145 | 206 | CDD | PMEI-like_3 | 36 | 189 | - | - | |
| Bva04g03145 | 206 | PANTHER | PECTINESTERASE | 7 | 197 | - | - | |
| Bva04g03145 | 206 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 189 | IPR035513 | - | |
| Bva04g03145 | 206 | PANTHER | PECTINESTERASE | 7 | 197 | - | - | |
| Bva04g03145 | 206 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 188 | IPR035513 | - | |
| Bva04g03145 | 206 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 6 | 185 | IPR006501 | GO:0004857 | |
| Bva04g03145 | 206 | SMART | PMEI_2 | 28 | 183 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva04g03145 | Bva-Chr4 | 25782907 | 25787259 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva04g03145 | 1 | 190 | Carbohydrate Esterase | AT2G47030 | 30.244 | 4.76e-14 | 68.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva04g03145 | K01051 | - | gmx:100781507 | 202.986 |