Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03141 ATGGCAGCCAGATTTGGCACAGAAGCTTTTCCCTTTTATGGTATGGGTTCCTCAGATTTGCGTGCTATGGGAAAGAGGTCCGTGGAATGGGATTTAAATAAGTGGAAGTGGGATGGTGATCTTTTCATAGCTAGCCCCCTGAATCCTGTGCCGGCAGATATTGTGGGTCAACAATTTTTCCCTCTTGATTCTGGGATCCCCACGGCTGGGGGTTCCTCCAACAGTTCGTCGTCTTGCTCTGATGAGGAAAATCTTGGGATTGACAAGGGTAAGAAAGAAGGGGACAAGAAAAGGAGAGTAATTGTGGTTGAAGATGACTGTGAGAAGGAGGAAGCAGGTAGCCTCAGCTTAAAGCTTGGTGGTAATGGTTCCCCAATTGCTGATAGGGAAATATCAAGTTGGGAAGGAACAAATGGGAAGAAAACCAGATTAACTGGAGGTAGTTCAAATCGAGCGGTGTGTCAGGTGGAGGACTGCGGTGCAGATCTGAGCAACGGTAAAGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCTAGTAGGGCTCTCGTCGGGAATGTAATGCAGCGGTTCTGTCAACAATGTAGTCGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGCGAAGCTGTCGGAGACGTTTAGCAGGCCATAATAAACGGAGGaggaaaacaaataatgatgCTGTTCCTAATGGAAGTTCACTGAACGATGATCAGACTAGTAGCTATCTCTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTAATAGGTCTGATCAGACCACAGATCAGGATCTGCTATGTCATCTTCTAAAGAGTCTTGCTGGTCAAAATGGTGAACAAGGGGGCAAAAACCTGTCTAACCTTTTGCGGGAACCTGGCAATTTGTTGAAAGAAGGGACATCATCTGGGAAGTCAGAGAAGGTTTCTACCTTATCATCAAATGCTTCTCAAGGCCAACATCAAACAGTACCTATACCTAAAATGCAACATCAAGTGATACATGCCCATGATGCCAGGGCTTCTGATCAACAAACCATGTCTTCCACAAAACCTAGCATTTCAAACAGTCCTCCAGCTTACTCAGAAGCTAGAGATAGTACGGCTGGACAGATCAAGATCAATAACTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATGGATGATATGGAAAGATTGCCTGTCTCTGCAAATCTTGGGACTGGCTCTCTTGATTACCCTTGGGCACAACAAGATTCTCTCCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAATCCCCTTCTAGTTCTAGCGGTGAAGCTCAGAGCCGCACAGATAGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCGCTTGCACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGACATGGAGAGCTACATACGACCTGGTTGTGTTGTTTTTACCATTTATCTGCACCAAGCTGAAGCTGTGTGGGAGGAAaTTTGCTATGATCTGACTTCCAGTTTAAATAGGCTTCTGGAGGTCTCAGATGATGCTTTCTGGAGAAAAGGATGGGTTTACATAAGGCTGCCACATCAGATAGCCTTCATTTTCGATGGTCAGGTTGTCATAGATACTTCCTTGCCTTTCAGAAGTAACAATTATGGTAAGATTTTGAGTGTTAGTCCGATTGCTGTACCAGCATCTAAGAGGACTCAATTTTTGGTTAAGGGCATCAACCTGATTCGCCCTGCCTCCAGGTTATTGTGCGCTCTAGAAGGGAAATATCTGGTCTGTGAAGATGCGCATGAGTCCACAGCCAGAAGAAATGAAGATGCTTATGAGTCAATGGATGACCTTGATTGCTCTAAAGAGGTTTATGAGGTCCAGTGTGTCCAGTTTTCCTGTTCTGTCCCTTTGCCAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGcagtttttttccttttatagttGCGGAGGAGGATGTTTGCTCAGAAATCTGCATGCTTGAGAATCTATTAGAATCAAGTGAAACTGATTTAGATGTTGGAGGAGCTGGAATAATCAAAGCTAAGAGTCAAGCCATGGATTTCATTCATGAAATGGGGTGGCTTCTCCACAGAAGCCAGTTGAAATCTAGGCTGGTTCACTTAAATTCTAATACGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTAGCGAGGAAACTCTTGAACCTACTGTTGGATGGAACTGTGGATACTGGAGATCAACCTTCCCTATATCTTGCACTTTCAGAAATGGCCCTTCTTCATAGAGCTGTAAGGAGAAATAGCAGGAAGTTGGTTGAACTGCTTTTGAGATATGCCCCTGAGAATATTTCTGACAAACTAGGACCTGACAACAAGGCACTGGTTGATGGAGAGGGTCGGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCAGGTTTGACACCACTCCACATAGCAGCTGGAAAAGATGGTTCTGAGGAAGTACTGGATGCTTTAACTGATGATCCGTGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGATACTACAGGTTTCACACCTGAAGATTATGCGCGATTACGTGGCCATTATACTTACATTCACCTGGTtcagaagaaaattaacaagaaacaAGTAGCAGCAGCTCATGTGGTGGTTGAGATTCCCAGTGAACAACCAGATAGCAGTACAAAGCAGAAGCAAAACGAGTTGACCACTAGCTTTGAGATAGGAAAAGCTTCAATGAGAAATGCCCAAGGACATTGCAGACTTTGTGATCGTAAATTGTCTTGTAGAAACACAATGATGGGTAGATCTTTGGTGTACAAACCTGCAATGCTCTCATTGGTGGCCATAGCAGCTGTCTGTGTCTGTGTAGCCCTTCTATTTAAGAGCTCACCTGAAGTTCTGTATGTATTCCAACCCTTCAGGTGGGAGTCATTGGACTTCGGTACAAGCTG 3062 0.4321 MAARFGTEAFPFYGMGSSDLRAMGKRSVEWDLNKWKWDGDLFIASPLNPVPADIVGQQFFPLDSGIPTAGGSSNSSSSCSDEENLGIDKGKKEGDKKRRVIVVEDDCEKEEAGSLSLKLGGNGSPIADREISSWEGTNGKKTRLTGGSSNRAVCQVEDCGADLSNGKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQTTDQDLLCHLLKSLAGQNGEQGGKNLSNLLREPGNLLKEGTSSGKSEKVSTLSSNASQGQHQTVPIPKMQHQVIHAHDARASDQQTMSSTKPSISNSPPAYSEARDSTAGQIKINNFDLNDIYIDSDDGMDDMERLPVSANLGTGSLDYPWAQQDSLQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLALRAQILDWLSHSPTDMESYIRPGCVVFTIYLHQAEAVWEEICYDLTSSLNRLLEVSDDAFWRKGWVYIRLPHQIAFIFDGQVVIDTSLPFRSNNYGKILSVSPIAVPASKRTQFLVKGINLIRPASRLLCALEGKYLVCEDAHESTARRNEDAYESMDDLDCSKEVYEVQCVQFSCSVPLPNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICMLENLLESSETDLDVGGAGIIKAKSQAMDFIHEMGWLLHRSQLKSRLVHLNSNTDLFPLKRFKWLMEFSMDHDWCAVARKLLNLLLDGTVDTGDQPSLYLALSEMALLHRAVRRNSRKLVELLLRYAPENISDKLGPDNKALVDGEGRSFLFRPDVVGPAGLTPLHIAAGKDGSEEVLDALTDDPCMVGIEAWKSARDTTGFTPEDYARLRGHYTYIHLVQKKINKKQVAAAHVVVEIPSEQPDSSTKQKQNELTTSFEIGKASMRNAQGHCRLCDRKLSCRNTMMGRSLVYKPAMLSLVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03141 1020 MobiDBLite consensus disorder prediction 283 374 - -
Bva04g03141 1020 MobiDBLite consensus disorder prediction 305 333 - -
Bva04g03141 1020 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Bva04g03141 1020 MobiDBLite consensus disorder prediction 67 83 - -
Bva04g03141 1020 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Bva04g03141 1020 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Bva04g03141 1020 SUPERFAMILY Ankyrin repeat 789 902 IPR036770 -
Bva04g03141 1020 MobiDBLite consensus disorder prediction 413 451 - -
Bva04g03141 1020 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 16 1019 - -
Bva04g03141 1020 SMART ANK_2a 787 817 IPR002110 GO:0005515
Bva04g03141 1020 SMART ANK_2a 844 874 IPR002110 GO:0005515
Bva04g03141 1020 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 1019 IPR044817 GO:0003677
Bva04g03141 1020 MobiDBLite consensus disorder prediction 65 91 - -
Bva04g03141 1020 MobiDBLite consensus disorder prediction 218 240 - -
Bva04g03141 1020 Gene3D - 762 922 IPR036770 -
Bva04g03141 1020 MobiDBLite consensus disorder prediction 345 374 - -
Bva04g03141 1020 Pfam SBP domain 154 227 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03141 Bva-Chr4 25770599 25778145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03141 24 1020 SBP-box Gene Family AT3G60030 56.083 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva04g03141 SBP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03141 - - gmx:100814273 1563.51