Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03136 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGAAGGAGTCTACCCTCCACCTTGTTCTTCGGCTCCACGGTGGTGCTAAGAAGCGTAAGAAGAAGACTTACACaaagcacaagaaaaagaaggcgAAACTCTCTGTTCTACGGTTCTACAAGGTCGATGATTCTGGCAAGGTCCAGAGGTTGAGGAAGGATTGCCCCAATGCTGAGTGTGGGGCTGGCACTTTTATGGCCAATCACTTTGACAGGCACTATTGTGGTGAGTGCGGGCTCACCTATGTTTATCAGAAAGCCGGTGGTGACTG 317 0.4637 MQIFVKTLTGKTITLEKESTLHLVLRLHGGAKKRKKKTYTKHKKKKAKLSVLRFYKVDDSGKVQRLRKDCPNAECGAGTFMANHFDRHYCGECGLTYVYQKAGGD 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03136 105 SMART Ribosomal_S27_2 51 96 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva04g03136 105 Pfam Ribosomal protein S27a 51 96 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva04g03136 105 PANTHER UBIQUITIN 1 19 - -
Bva04g03136 105 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 17 95 - -
Bva04g03136 105 PANTHER UBIQUITIN 17 95 - -
Bva04g03136 105 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 19 - -
Bva04g03136 105 Gene3D - 33 103 IPR038582 -
Bva04g03136 105 SUPERFAMILY Zn-binding ribosomal proteins 49 102 IPR011332 GO:0006412
Bva04g03136 105 Gene3D - 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03136 Bva-Chr4 25754341 25754722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03136 1 103 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 58.442 3.23e-41 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03136 K02977 - cit:102625746 140.198