Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03125 ATGGATGTTAAGGGGAAAGGTGGGTCTGCAGCAGAGGCGAGGGAAGAAGAGATGGGCGTCCGAAAAGGTCCATGGACAGTTGACGAGGACACCCTTCTCTTCAATTACGTCGCCTCTAACGGAGAAGGTCGCTGGAATTCCGTCGCCCGTTTTGCAGGTCTCAAGAGAACTGGGAAAAGCTGTAGACTAAGATGGCTCAACTACTTGCATCCTGATGTTCGCCGTGGAAATATCACTCTCCAAGAACAGATATTGATTCTCGATCTCCAATCTCGGTGGGGCAATAGGTGGTCGAAGATTGCGCAGCAGTTGCCGGGAAGAACGGACAacgagataaaaaattattggaggACTCGAGTGAAAAAGCAGGCCAAGCAACTCAACTGTGACGTCAATAGCAAGCAGTTCAGAGACGCCATGCGTTACGTATGGATACCCCGCTTGCTGGAACGGATTCGGGCTCATCCAACCCTCAAACAATTTCATCACCACCACTCGCCAACACACTCTGTAACTCTAAACCCAAATGACGCCTTCGCTAATTTATCTGAGTCGTCCACGGAGATCCATGTTCCATCAAATTCGGAGCAAAGCGAATTCTTGGAATTCCCGGGTCGTAAGGTTTTggataaacaagaaaatgtgtCCGATTTCAGCCCGATGGATTTGAGTTTCCATGGTCAAGTGTGGGGGCAGGGGAATGGCTTTGGTGGTGGGGACTCCCCGTGGAACGATGAAAATATGTGGTTTTTGCAACAACACTTTTGTGATGACTTGTA 779 0.4711 MDVKGKGGSAAEAREEEMGVRKGPWTVDEDTLLFNYVASNGEGRWNSVARFAGLKRTGKSCRLRWLNYLHPDVRRGNITLQEQILILDLQSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVKKQAKQLNCDVNSKQFRDAMRYVWIPRLLERIRAHPTLKQFHHHHSPTHSVTLNPNDAFANLSESSTEIHVPSNSEQSEFLEFPGRKVLDKQENVSDFSPMDLSFHGQVWGQGNGFGGGDSPWNDENMWFLQQHFCDDL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03125 259 Gene3D - 78 141 - -
Bva04g03125 259 MobiDBLite consensus disorder prediction 1 20 - -
Bva04g03125 259 CDD SANT 24 69 IPR001005 -
Bva04g03125 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Bva04g03125 259 Gene3D - 22 74 - -
Bva04g03125 259 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Bva04g03125 259 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Bva04g03125 259 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Bva04g03125 259 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Bva04g03125 259 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Bva04g03125 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 9 252 - -
Bva04g03125 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Bva04g03125 259 SMART sant 21 71 IPR001005 -
Bva04g03125 259 SMART sant 74 122 IPR001005 -
Bva04g03125 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 252 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva04g03125 259 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03125 Bva-Chr4 25716831 25718129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03125 9 258 MYB Transcription Factor Family AT2G47190 51.538 8.68e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g03125 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03125 K09422 - qsu:112028687 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03125 04 25716831 25718129 Bva13g03094 13 21834919 21836271 BWGD