Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03104 ATGTCGAAGAGGAAGTTCGGATTCGAAGGTTTTGGCATAAACCGCCAAGCAACCTATAATTTTGAGCGATCTCAAGCCCCTCAACGACTCTATATCCCTCCTTCCTCACGTCACGGGCATGACAACTACGAGGATACCGACCTTGACAACATCGAATACGACGATAATGATACTGCCAAGGACGGGAGCAATAATGATGGCAGCAACAACAATGGTGACAACGAAGAAGAGATTGATCCCCTTGATGCTTTCATGGAGGGGATTCATGAGGAAGTGAAGGCTGCGCCGCCTCCAAAGCCGAAGGAGAAGGCAGAGGACCGATATAGGGATGATGATGAGGACGATCCGATGGAGAGCTTTTTGAGAGCGAAGAAGGACTTAGGATTGACCCTGGCGTCCGAGGCTCTTCATGCTGGATATGATTCTGACGAGGAGGTTTATGCTGCTGCAAAGGCTGTGGACGCTGGAATGGTAGAGTATGATTCTGATGATAATCCTATCGTTCTTGACAGGAAGAAAATTGAGCCAATACCAGCACTAGATCACAGTTCTATTGACTACGAACCATTTAATAAGGATTTTTACGAGGAGAAACCTTCGATATCAGGTATGAACGACCAAGATGTTGCTGAATATCGGAAGAGTTTAGCTATTCGTGTATCAGGTTTTGATGTTCCTAAGCCCGTTAAGACATTTGAGGACTGTGGTTTTTCTCCACAACTTATGAATGCTATAAAAAAACAAGGTTATGAGAAACCGACTTCCATACAGTGCCAAGCTTTACCCGTTGCTCTTTCTGGTAGAGACATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTACATATCATGGATCAGCCTGAACTTCAGAAGGAAGAGAGTCCTATTGGAGTAATCTGTGCACCTACTAGAGAATTGGCTCATCAGATATACTTGGAGTCCAAGAAATTTGCAAAAGCTTATGGGATTCGTGTCTCTGCTGTGTATGGTGGAATGTCAAAGCTTGATCAATTCAAAGAACTCAAGGCAGGTTGTGAGATAGTCGTTGCTACTCCTGGCAGATTGATAGATATGCTGAAAATGAAGGCTCTTACGATGATGAGAGCAACTTACTTGGTTCTTGATGAGGCTGATCGAATGTTTGACCTTGGATTTGATCCACAAGTAAGGTCCATTGTTGGTCAAATTAGACCAGACCGCCaaactttacttttttctgCAACAATGCCACGTAAAGTTGAAAAGTTGGCAAGGGAAATCCTTACTGATCCTATAAGAGTAACAGTCGGGGAAGTTGGAATGGCAAATGAGGATATTACGCAAGTAGTTCAAGTAATTCCTTCTGATGTAGAGAAATTGCCTTGGCTTTTGGAAAAGCTGCCTGGAATGATTGATGAAGGTGATGTCCTGGTATTTGCTTCCAAAAAGGCTACGGTGGATGAAATTGAATCACAATTAGCTCAGAGAGGCTTTAAAGTTGCAGCTCTTCATGGTGATAAAGATCAAGCTTCTCGGATGGAAATTTTGCAAAAGTTTAAATCTGGTCTTTGCCATGTACTTATTGCAACTGACGTTGCTGCTCGTGGTCTTGACATCAAGTCGATTAAGTCAGTGGTAAACTTTGACATTGCAAAAGATATGGATATGCATGTTCATCGCATTGGTAGAACAGGTCGTGCTGGTGATAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGTTTAATTGCAGCTGGGCAGAATGTGTCTATGGAGTTAATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAGGGAGGTGGGAGGAAAGGTAGAGGGAGAGGAGGTGGTGCGGGGGGTCGAGGTGTTCGGGGAGTGGATTTTGGCTTGGGTATTGGATATAATCCAGAGTCCAACAACACTCCATCTAACGCGGTTCCAAGTCGGTCTGCCGCTGTAAATTCAATGCGAACAGGAATGATGGCGCAATTTAGGAGTAGCTTTGTCGCTGcttcaaattctcaaaatcaagGCTTTGGTAACAGTATAGGTGTGCCTGCTAATAAGAGACCAGCACTCCCAGGCTTTGTTTCCGGTGGATCGATAGGTGGGGATATAAATATTACTCACTCTACTGCTGCATCCAACCCCGCTACTTCAGCAGTAAATGCCACATCTGGAGTTAATACTAGTCAGAAGAACACTGAGAGTTCTAGACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATA 2312 0.4338 MSKRKFGFEGFGINRQATYNFERSQAPQRLYIPPSSRHGHDNYEDTDLDNIEYDDNDTAKDGSNNDGSNNNGDNEEEIDPLDAFMEGIHEEVKAAPPPKPKEKAEDRYRDDDEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLDRKKIEPIPALDHSSIDYEPFNKDFYEEKPSISGMNDQDVAEYRKSLAIRVSGFDVPKPVKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQALPVALSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEESPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFDPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVQVIPSDVEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMEILQKFKSGLCHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGGAGGRGVRGVDFGLGIGYNPESNNTPSNAVPSRSAAVNSMRTGMMAQFRSSFVAASNSQNQGFGNSIGVPANKRPALPGFVSGGSIGGDINITHSTAASNPATSAVNATSGVNTSQKNTESSRPRERRRPSGWDR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03104 770 MobiDBLite consensus disorder prediction 91 116 - -
Bva04g03104 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 608 IPR027417 -
Bva04g03104 770 MobiDBLite consensus disorder prediction 615 641 - -
Bva04g03104 770 Pfam DEAD/DEAH box helicase 254 425 IPR011545 GO:0003676|GO:0005524
Bva04g03104 770 CDD SF2_C_DEAD 448 580 - -
Bva04g03104 770 MobiDBLite consensus disorder prediction 17 31 - -
Bva04g03104 770 MobiDBLite consensus disorder prediction 733 770 - -
Bva04g03104 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 610 IPR001650 -
Bva04g03104 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 230 258 IPR014014 GO:0003724
Bva04g03104 770 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 382 390 IPR000629 -
Bva04g03104 770 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 658 - -
Bva04g03104 770 MobiDBLite consensus disorder prediction 1 77 - -
Bva04g03104 770 CDD DEADc_DDX42 241 437 - -
Bva04g03104 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 439 IPR027417 -
Bva04g03104 770 Pfam Helicase conserved C-terminal domain 474 570 IPR001650 -
Bva04g03104 770 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 658 - -
Bva04g03104 770 MobiDBLite consensus disorder prediction 755 770 - -
Bva04g03104 770 MobiDBLite consensus disorder prediction 733 754 - -
Bva04g03104 770 Gene3D - 438 614 IPR027417 -
Bva04g03104 770 Gene3D - 192 437 IPR027417 -
Bva04g03104 770 SMART helicmild6 489 570 IPR001650 -
Bva04g03104 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 436 IPR014001 -
Bva04g03104 770 SMART ultradead3 249 451 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03104 Bva-Chr4 25604678 25609843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03104 230 586 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 1.17e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03104 K12835 - gmx:100814854 1249.96