Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03086 ATGGGAGAGGTAGTTTTGTTTATCGACAATTTGAACTCAATTTCTGGATTTTCTCGCTGTAGAATATGTCACGAAGAAGAATTTGAGAGCTCGGCAAGTTTGGAAGCTCCCTGTGCTTGCTCTGGCACCGTTAAGTTCGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAATCTGTGAAATATGCCTCCAGCCATATGAACCTGGATACACAGCACCTCCAAAGAAAGCACAGGATCAGATAATTGATGCAGCAATGACCATCAGAGAAAGCCTACAAATTCCAAGGACGGAACATGAAGCATTAAACGCAATATTAGTTGAAGGAATACCTAGAGATGACATTGACGAGTATGCTGAATGCACATCTGCCGCGGATAGAAGCGTGTCTTGCTGTCGATCACTGGCTTTGGCTTTTACATTTGTTTTGCTTGTAAGACATCTTTTCACGGTGCTCACAAGTGGAACAGAAGACTACCCATTCACAATTCTTACAGTATTTATACTTAGGGCTAGTGGAATTGTTCTACCCATGTACATAATTATTAGGACGATCACAGCAATTCAAAGAAGTGCTCGGCGTCGGCACCACTACCAGGATTCTGATGATGACACATCCATGTCTGAAGGAGATGATGGAGAAAATGAGCCAGCGCAACATGTGAACTTTAGGCACTCATA 695 0.4273 MGEVVLFIDNLNSISGFSRCRICHEEEFESSASLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQPYEPGYTAPPKKAQDQIIDAAMTIRESLQIPRTEHEALNAILVEGIPRDDIDEYAECTSAADRSVSCCRSLALAFTFVLLVRHLFTVLTSGTEDYPFTILTVFILRASGIVLPMYIIIRTITAIQRSARRRHHYQDSDDDTSMSEGDDGENEPAQHVNFRHS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03086 231 MobiDBLite consensus disorder prediction 199 231 - -
Bva04g03086 231 SMART ringv_2 19 68 IPR011016 GO:0008270
Bva04g03086 231 Pfam Protein of unknown function (DUF3675) 73 190 IPR022143 -
Bva04g03086 231 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Bva04g03086 231 CDD RING_CH-C4HC3_MARCH 20 67 - -
Bva04g03086 231 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 221 - -
Bva04g03086 231 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Bva04g03086 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 221 IPR033275 -
Bva04g03086 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Bva04g03086 231 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03086 Bva-Chr4 25510244 25513017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03086 20 67 C3H Transcription Factor Family AT5G05830 40.385 6.07e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03086 - - gmx:100797029 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03086 04 25510244 25513017 Bva13g03050 13 21638792 21640941 BWGD