Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03068 ATGTCTGAGTCTGGGCACAAGGGAAGTCGAAGTTCCTGTTCCACAACAAAACTGTTTGGTTTTCCACTCATATTGCaggaggaagaaaaatatgtaaaagaagaaaagaggaaattCAAGTGCCAATATTGCAGACGAGTGTTTATAAACTCGCAGGCGCTTGGGGGTCACCAAAATGCACACAAGAGAGAGCGGCAAAGAGCAAGGCGCTTCCAGTTCCAGAGAACACTACCTCCACCTGCAGCTGCATATCTTGTTAGATCACTTAATCAGTCACCACCATCATCCTCCATACACGCCACTGCCGTTGCTAAATTTCAACCACCGCCATTATCCTTACCCTTACCATTACCCTCAACCCCAGTTTTGATTCCATCAACAGCTTATTCTTATGTTAATGTTGATGTTCCTCTACAATTTCCTTACCACTTTCATGCCTCACCAATCCTACAGCAATCTGCTCCTAGTCTTGCTAAATTGCCAGTGAATGATCCAACTGTCAATAATGTCGATGCCcatctaaatta 527 0.4099 MSESGHKGSRSSCSTTKLFGFPLILQEEEKYVKEEKRKFKCQYCRRVFINSQALGGHQNAHKRERQRARRFQFQRTLPPPAAAYLVRSLNQSPPSSSIHATAVAKFQPPPLSLPLPLPSTPVLIPSTAYSYVNVDVPLQFPYHFHASPILQQSAPSLAKLPVNDPTVNNVDAHLN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03068 175 PANTHER ZINC FINGER PROTEIN 5 5 174 IPR044299 GO:0010090
Bva04g03068 175 PANTHER ZINC FINGER PROTEIN 6-LIKE 5 174 - -
Bva04g03068 175 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Bva04g03068 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Bva04g03068 175 Gene3D Classic Zinc Finger 11 80 - -
Bva04g03068 175 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03068 Bva-Chr4 25425680 25426207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03068 17 95 C2H2 Transcription Factor Family AT5G06650 42.391 6.33e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g03068 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03068 - - gmx:100806818 105.531