Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03066 ATGGATTTTCAACAGGAGAGAAGTTGTAGGGATTGCCATACAAGGAGGACGCCTTTATGGCGAGCCGGTCCCGATGGACCAAGGTCTCTTTGCAACGCATGTGGGTTGAGATACATaaagaggaggaggaggaattTGCTAGGATTGGATAATGGATCAAGAGTAAACAAGACAAGGAAGAAGAACACAAGGAATATAAGCAGTGAGCTTGGAGGTTCAATGAATCAGAACGTGGAACTGCAATTCAAGttaaaagaggaagaagaagcgGCCGTATTGCTAATGGCTCTTTCTTCTGCTTCCTTAAAGAATTTCAAACAAGAAACCAATTA 332 0.3765 MDFQQERSCRDCHTRRTPLWRAGPDGPRSLCNACGLRYIKRRRRNLLGLDNGSRVNKTRKKNTRNISSELGGSMNQNVELQFKLKEEEEAAVLLMALSSASLKNFKQETN 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03066 110 MobiDBLite consensus disorder prediction 50 71 - -
Bva04g03066 110 PANTHER GATA TRANSCRIPTION FACTOR 16-LIKE 5 102 - -
Bva04g03066 110 SMART GATA_3 3 54 IPR000679 GO:0006355|GO:0043565
Bva04g03066 110 ProSiteProfiles GATA-type zinc finger domain profile. 3 59 IPR000679 GO:0006355|GO:0043565
Bva04g03066 110 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 50 - -
Bva04g03066 110 Pfam GATA zinc finger 9 43 IPR000679 GO:0006355|GO:0043565
Bva04g03066 110 ProSitePatterns GATA-type zinc finger domain. 9 34 IPR000679 GO:0006355|GO:0043565
Bva04g03066 110 PANTHER OS01G0976800 PROTEIN 5 102 - -
Bva04g03066 110 Gene3D - 4 68 IPR013088 GO:0006355|GO:0008270
Bva04g03066 110 CDD ZnF_GATA 8 61 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03066 Bva-Chr4 25416472 25417464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03066 5 102 C2C2-Gata Transcription Factor Family AT5G49300 45.045 3.71e-21 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva04g03066 GATA 5.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03066 - - zju:107426314 90.5077