Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03050 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGTTACAGGGGTCGCCGCCTTTCCGCTTCTGATATTTGGCCCAATTCATTCGATAAGCAGAACGATTTAGACCCGGATTTCAACTCGATTCCCCTCAAGAGATCCCAACTTTCCTCagTTAATGAGCAAGTGGAAAAGCCAGTGAAGAGGCAGAGGAAAAACATTTACAGAGGTATTCGGCAGCGTCCGTGGGGTAAATGGGCTGCTGAGATTCGTGATCCCAGGAAAGGGGTTCGAGTTTGGCTTGGTACTTTCAACACCGCCGAAGAAGCTGCTAGAGCCTATGACAGAGAGGCTCGCAAAATCCGAGGCAAGAAGGCCAAAGTAAATTTTCCTAACGAAGACGACGAGTACTCCATTCAAGCTCGTCGTAACCCTCCCCCTCCACCCCAACGCCCAAATCCTAATATCTATCAACCCTACGGTTCTTATTTGAATGATGTCCCAAAATGTCTGAATTTGGAATTTGGTTATGATCTGAACCAAGTAGAGGCAATTCCCTCCAATGGGTTCATGACTGTTGGTGCTATCAACGCTGACCCAATTGTTTTTTCTGGCGATAAAAATTCTGGAAGTGGTTCAGGGTCAGAGGGTTCTTACTCAACGACGGAATTCAAGGGCCCGAGCCATACAATAAACAATTATGTTTCTCAGCCGAAGATGAATGGAAAAGAGGCAAACAGGGAAGAGAAGATGAACAAGGAAGCGATTGGAGTTCGGGAGGAAGAAAACCAAGTACAGAAGCTGTCTGAGGAGTTGATGGCGTACGAGAACTACATGAAGTTTTATCAGATTCCGTACTACGATGGTCAATCGACAGCGCAGAATAACGCTCAGGAAAGCTTGGTCGGTGATCTGTGGAGCTTCGAGGATGAGTGCCTTCCTGCTTCTGGGAGCTCGTCAGCAATCTG 947 0.4731 MCGGAIIADFIPRYRGRRLSASDIWPNSFDKQNDLDPDFNSIPLKRSQLSSVNEQVEKPVKRQRKNIYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARRNPPPPPQRPNPNIYQPYGSYLNDVPKCLNLEFGYDLNQVEAIPSNGFMTVGAINADPIVFSGDKNSGSGSGSEGSYSTTEFKGPSHTINNYVSQPKMNGKEANREEKMNKEAIGVREEENQVQKLSEELMAYENYMKFYQIPYYDGQSTAQNNAQESLVGDLWSFEDECLPASGSSSAI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03050 315 PANTHER EREBP TRANSCRIPTION FACTOR 1 304 - -
Bva04g03050 315 MobiDBLite consensus disorder prediction 118 133 - -
Bva04g03050 315 MobiDBLite consensus disorder prediction 200 230 - -
Bva04g03050 315 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Bva04g03050 315 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Bva04g03050 315 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Bva04g03050 315 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Bva04g03050 315 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Bva04g03050 315 PANTHER DNA-BINDING DOMAIN 1 304 IPR044808 GO:0003700|GO:0009873
Bva04g03050 315 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Bva04g03050 315 MobiDBLite consensus disorder prediction 118 152 - -
Bva04g03050 315 Pfam AP2 domain 68 116 IPR001471 GO:0003700|GO:0006355
Bva04g03050 315 Coils Coil 244 271 - -
Bva04g03050 315 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03050 Bva-Chr4 25338540 25339880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03050 1 125 AP2-EREBP Transcription Factor Family AT3G16770 54.676 3.26e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g03050 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03050 K09286 - gmx:100819416 368.237