Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03040 ATGGATTCCAAGATCTTTTGCTTTGCCACCTTTCCATTGCtatttctccttctcttgtTTGCATTACAAGCAAATGCGGATATCTCGCTGGACACCCTTGTTGACCCAAAAACCATTTGCGAGTCCACCTCATCTCCATCTTATTGCGAAGCCGTGCTTCCTAAGCAACATGGTAAACTCCACGACTTTGGCAAGTTCTGTCTCCAAAAATCCTTACTTCAGAGCCGCAGGTTCTCCGACATGGTGAACTTCTATCTTGGTGGCAAGTCCACCTTGTCTGAAAAGACAATTCGTGCATTGAATGATTGCCAATTTCTCTCTCAACTCAATGTTGAATACTTAAACAAGTGCAATGAGTTTGCGAGCAGGGCCACCGAAACTCTTTCTGATTCTGAAGCTGATTATGCCCAAACCTTGCTCAGTGCCATTTTAACCAACCAACAGACTTGTTTAGAGGGTTTAACCACCACGGCTTCTGATTTGAGCATAAAGAATGGACTTTTGGGTGCACTCTCCGATGACAGTAAGCTCCACAGTTTATCTCTGGCTCTGTTCACAAACGGTTGGGTGCAAAAGAAGAATGCTCCGATCTTATGGGATTCTGAAGGAGTCCACCCGGGTTTCAGCAATGGTCGATTACCTCTCAAGATGTCAAGCAAAACAAGGGCCATTTATGACTCTGTGAGAGGCAGGAGAAAGCTCGGAGACGAGGATAGTGTTTTGATTAGTGACATTGTGGTTGTGAGCCAAGATGGAAGTGGAAACTTCACCACTATAAACGACGCCGTCGCTGCAGCTCCAATTAACTCTAACGGAACCGATGGCTATTACTTGATTTATATCGCAGAGGGTGTCTATGAAGAATACGTGTCCATCCCCATAAACAAACCTTATTTGATCATGATCGGAGACGGAATCAACCGTACAATTATCACAGGCAACCGCAGTGCCGGTGATGGATGGACAACATTCAATTCAGCCACGTTTGCTGTGGTGGCACCTAATTTTGTAGCAGTGAACATAACATTCCGTAACACTGCTGGGCCAAGCAAGTTCCAAGCAGTGGCAATGAGAAGTGGTGCAGATATGTCTACATTCTACAGCTGCAGCTTCGAAGGGTACCAAGACACTCTGTACACTCATTCTCTGAGGCAATTTTACAGAGAATGTGACATTTACGGCACAATAGATTTCATATTAGGAAATGCTGCGGTTTTTCTGCAAAAATGCAACATATATGCCCGGCTTCCATTACCGGGACAGTTCAATCCCATCACAGCTCAGGCACGAACAGACCCAAATCAGAACACTGGCATTTCCATTCATAACTGTACCATTAAAGCTGCTGACGATTTGGCTCCGAGTGTTGGCACTGTGAAAACTTACCTGGGGAGGCCATGGAGGCAGTATTCAAGGACCGTGGTTATGCAGTCATTCTTGGACAGTTTAATAGACCCAGCTGGTTGGTCTGTATGGGATGAGGATTTTGCACTGAGCACGCTGTATTATGCGGAGTACGATAACAGTGGACCTGGATCAAACACTTCCGGCAGAGTAACATGGCCTGGCTTCCATGTTATTAACGCCACAGATGCAGCTAATTTCACTGTGGTGAACTTCATTCAGGGAAATGATTGGTTGCTTCAAACTGGAGTTCCTTATATTCGTGGCCTTATAGCAACTAACAAGAAGGGAAAAGTGATTGACACTGGAAATTG 1718 0.4476 MDSKIFCFATFPLLFLLLLFALQANADISLDTLVDPKTICESTSSPSYCEAVLPKQHGKLHDFGKFCLQKSLLQSRRFSDMVNFYLGGKSTLSEKTIRALNDCQFLSQLNVEYLNKCNEFASRATETLSDSEADYAQTLLSAILTNQQTCLEGLTTTASDLSIKNGLLGALSDDSKLHSLSLALFTNGWVQKKNAPILWDSEGVHPGFSNGRLPLKMSSKTRAIYDSVRGRRKLGDEDSVLISDIVVVSQDGSGNFTTINDAVAAAPINSNGTDGYYLIYIAEGVYEEYVSIPINKPYLIMIGDGINRTIITGNRSAGDGWTTFNSATFAVVAPNFVAVNITFRNTAGPSKFQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVFLQKCNIYARLPLPGQFNPITAQARTDPNQNTGISIHNCTIKAADDLAPSVGTVKTYLGRPWRQYSRTVVMQSFLDSLIDPAGWSVWDEDFALSTLYYAEYDNSGPGSNTSGRVTWPGFHVINATDAANFTVVNFIQGNDWLLQTGVPYIRGLIATNKKGKVIDTGN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03040 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 187 IPR035513 -
Bva04g03040 572 SUPERFAMILY Pectin lyase-like 242 557 IPR011050 -
Bva04g03040 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Bva04g03040 572 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Bva04g03040 572 SMART PMEI_2 31 184 IPR006501 GO:0004857
Bva04g03040 572 Gene3D - 240 558 IPR012334 -
Bva04g03040 572 PANTHER PECTINESTERASE 21 557 - -
Bva04g03040 572 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 21 557 - -
Bva04g03040 572 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Bva04g03040 572 CDD PMEI-like_3 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03040 Bva-Chr4 25309170 25310978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03040 14 560 Carbohydrate Esterase AT4G02330 58.246 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03040 K01051 - gmx:100813051 719.539