Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03038 ATGGCTTCTTCCAAGCTCTGTCCCCTCCCAAGAATTTCTATTCTGGTTCTTCTGTTATCCTTGTTTGCCTATCTAGCTTCGGCAGCCACAACCACAACCACTCCCAGTCCCAGTCCCACCACACCTGTCTCTACTGGAACTGTTTGCCAATCAACCCCGGATCCATCTTATTGTAAATCAGTTCTCCCTTCCCAAAACGGCAACGTTTACGACTATGGCCGGATTTCAGTTAAGAAGTCATTGTCCCAAGCCCAAAAGTTCTTGAACTTGGTTGACAAGTACCTCGGAAAACGGTCCGCGTTGTCTGTCACCGCCGTCCGTGCACTGGAAGATTGCCGGACACTTGGAGAGCTGAGCTATGATTTCCTTTCGAGTTCTTTTCAAACTGTGAACAAGACAACGACGTTTCTCCCGAGTTTTCAAGCTGACAATATCCAAACTCTGCTAAGTGCAATCTTAACCAACCAGCAAACCTGCTTGGACGGCCTTAAAGACACAGCTTCCGCTTGGAGTGTTCGAAATGGGCTCTCTGCGCCGCTTTCTAATGACACCAAGCTCTACAGTGTCTCTCTGGCTCTGTTCACAAAGGGGTGGGTTCCGAAGACTAAGAAGAAAGCCAATGCAGCTGGGTTGCCCAGGACAAATAATAGGAAGTTAATTGGATTCCAAAATGGCCATTTGCCCCTTAAGATGTCAACCAGAACCCGTGCCATCTATGAGTCTGTCAGTCGAAGAAACCTGATTCAATCCCCCGTGGGTCTGGATGTTTTGATCAAAGACATGGTAACCGTGAGACAAGATGGAAGTGGAAACTTCACAACCATCAATGATGCCCTCGCCGCAGCTCCAAACAGATCTTCCACAGACAACACCGGCTACTTCCTCATCTATGTCACAGCGGGTGTCTATGAAGAATACGTGTCCATTGACAAGAAAAAGGCATACCTCATGATGGTCGGAGACGGCATCAACAAGACAATCATCACAGGGAATCATAATGTCGTTGATGGCTGGACAACCTTCAACTCCGCAACATTTGCTGTTGTTGCTCCAGGATTCGTGGCCGTGAACATGACTTTCCGTAACACTGCCGGGGCAAGCAAGCACCAAGCTGTTGCAGTTCGGAACGGAGCTGATTTGTCCACGTTTTACAGCTGCAGCTTCGAGGGGTACCAGGATACTTTATACACACACTCACTTAGACAATTCTACAGAGAATGTGACATTTACGGAACTGTGGATTTTATTTTCGGAAACGCCGCCGTTGTTTTCCAAAACTGCAACCTGTATCCCCGTCTACCCATGAGTGGACAATTCAATGCCATCACTGCCCAAGGCCGAACCGACCCGAATCAGAACACGGGTACCTCGATCCATAATTGCGCCATTAGAGCGGCGGATGATTTGGCTGCTAGCACTGGAGCTGCTGCAACTTATTTGGGAAGACCATGGAAGGAGTATTCAAGGACGGTTTATATGCAGACATTCATTGACAGTGTGGTGGACGCTGCGGGTTGGCGTGCATGGGACGGTGATTTTGCATTAAGCACATTGTACTATGCAGAGTACGATAACAGTGGTCTCGGGTCGGACACATCTAAACGGGTCACATGGCCGGGTTACCACTTGATAAACGCTACGGATGCCTCTAACTTCACGGTCTCTAACTTCTTGCTGGGGGACGATTGGTTGCCCAAGACAGGAATCACCTACAACAGTGGCTTGATTTG 1730 0.4861 MASSKLCPLPRISILVLLLSLFAYLASAATTTTTPSPSPTTPVSTGTVCQSTPDPSYCKSVLPSQNGNVYDYGRISVKKSLSQAQKFLNLVDKYLGKRSALSVTAVRALEDCRTLGELSYDFLSSSFQTVNKTTTFLPSFQADNIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLSAPLSNDTKLYSVSLALFTKGWVPKTKKKANAAGLPRTNNRKLIGFQNGHLPLKMSTRTRAIYESVSRRNLIQSPVGLDVLIKDMVTVRQDGSGNFTTINDALAAAPNRSSTDNTGYFLIYVTAGVYEEYVSIDKKKAYLMMVGDGINKTIITGNHNVVDGWTTFNSATFAVVAPGFVAVNMTFRNTAGASKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCAIRAADDLAASTGAAATYLGRPWKEYSRTVYMQTFIDSVVDAAGWRAWDGDFALSTLYYAEYDNSGLGSDTSKRVTWPGYHLINATDASNFTVSNFLLGDDWLPKTGITYNSGLI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03038 576 SMART PMEI_2 38 193 IPR006501 GO:0004857
Bva04g03038 576 SUPERFAMILY Pectin lyase-like 259 573 IPR011050 -
Bva04g03038 576 CDD PMEI-like_3 47 198 - -
Bva04g03038 576 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 32 574 - -
Bva04g03038 576 Pfam Plant invertase/pectin methylesterase inhibitor 47 193 IPR006501 GO:0004857
Bva04g03038 576 Gene3D - 256 575 IPR012334 -
Bva04g03038 576 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Bva04g03038 576 PANTHER PECTINESTERASE 32 574 - -
Bva04g03038 576 Pfam Pectinesterase 262 561 IPR000070 GO:0030599|GO:0042545
Bva04g03038 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 196 IPR035513 -
Bva04g03038 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 195 IPR006501 GO:0004857
Bva04g03038 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 196 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03038 Bva-Chr4 25297401 25299490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03038 12 576 Carbohydrate Esterase AT4G02330 62.912 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03038 K01051 - gmx:100800971 878.626