Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03016 ATGTTGCAATTTTACTTGGATCCTGAGTTTATTTCTCTATACTGTTGCGGGTTCTTTCGTCTTTGCAATAATTTAAAGAGAGGAAGGATTAGCAGCTATTCCAAACTAATCGAAAGTTATCCGGTTCCAGGAAAGATGAGTAGACGTGGTAGCAGAACTGTCTACGTTGGGAATCTACCGGGTGATATTCAAGAAAGAGAAGTGGAAGATTTGTTTGTCAAGTATGGACACATAACTCATATTGACCTAAAGGTTCCTCCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTCTCAAGATGCTGAGGATGCAATTCGTGGTCGGGATGGCTATGATTTTGATGGGCACCGGTTACGGGTAGAGCCTGCACATGGAGGGCGTGGTCATTCATCATCAAGAGATCGACATAGTAGTCACAGCAATGGTCGCGGTGGACGAGGTCTATCTAGGCGCTCTGAATATCGTGTTCTTGTCACTGGGTTGCCATCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAGGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGAAGAGGTACAACTGGGATTGTAGATTACACAAACAATGATGACATGAAATATGCGATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCCAGGGCTTATGTTCGTGTGAGGGAGTATGATTCTAGGCATGACTCCTCTAGAAGTCCTACTCGTGGTCGATCTTATTCTAGGGGCAGAAACTATAGTCGCAGCCGAAGCCGTAGTAACAGTCGTGGCCAAGGCCAAAGCAAATCTCCAAGGGGAAAATCTTCCCAGCGTTCACCTGCTAGATCTCCTTCAAAATCTGTTTCTCGCTCACGCTCTAGGTCAAGGTCCCGTTCTTTATCAGGATCAAGATCAAGATCCAGATCTCCATTGCCTTTGCGTAATAAAAGCCCAAAAAGACGCAGTGCCAGCAGGAGCCCGAGTAGGAGCAGAAGCAGAACCAAGAGTGACCGCTA 1019 0.4593 MLQFYLDPEFISLYCCGFFRLCNNLKRGRISSYSKLIESYPVPGKMSRRGSRTVYVGNLPGDIQEREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRGGRGLSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDGRGTTGIVDYTNNDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRHDSSRSPTRGRSYSRGRNYSRSRSRSNSRGQGQSKSPRGKSSQRSPARSPSKSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKRRSASRSPSRSRSRTKSDR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03016 339 MobiDBLite consensus disorder prediction 244 289 - -
Bva04g03016 339 Gene3D - 156 233 IPR012677 -
Bva04g03016 339 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 48 332 - -
Bva04g03016 339 MobiDBLite consensus disorder prediction 231 339 - -
Bva04g03016 339 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 48 332 - -
Bva04g03016 339 SMART rrm1_1 53 123 IPR000504 GO:0003723
Bva04g03016 339 SMART rrm1_1 157 228 IPR000504 GO:0003723
Bva04g03016 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 220 IPR000504 GO:0003723
Bva04g03016 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 121 IPR000504 GO:0003723
Bva04g03016 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 127 IPR000504 GO:0003723
Bva04g03016 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Bva04g03016 339 CDD RRM1_SF2_plant_like 53 123 - -
Bva04g03016 339 SUPERFAMILY RNA-binding domain, RBD 51 222 IPR035979 GO:0003676
Bva04g03016 339 CDD RRM2_SF2_plant_like 156 231 - -
Bva04g03016 339 MobiDBLite consensus disorder prediction 114 152 - -
Bva04g03016 339 Gene3D - 43 155 IPR012677 -
Bva04g03016 339 MobiDBLite consensus disorder prediction 314 329 - -
Bva04g03016 339 MobiDBLite consensus disorder prediction 114 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03016 Bva-Chr4 25203341 25213352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03016 47 240 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 5.40e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03016 K12890 - gmx:100796900 355.525