Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03014 atgaagttcTGCAAGAAATACCAGGAGTACTTGCAAGGTCAGGAGAAGAAACTTCCTGGTGTTGGCCTCAAGAAGCTCAAGAAGATATTGAAGAAGTGCAGGAGAGACTGTCAATCCCAGAGAGGCCCCCTTGCCGTCCAAACCTGCGCCAATAGTAAATGCTCGGTTTGCGATGGGgccttcttctcttctcttcgcACTGAAATGTCACAAGTAGTAGGCTGCTTCAACCATCGTGCACAGAAATTGCTGGAGCTACATCTTGCTTCTGGTTTCAGAAAATACTTTCTCTGGGCCAAAGCCAAATTAGGAAACCACGCATCTCTAACTGCAGAAGGCAAAGATCTGGTTATTTATGCACTAATAAATGCCATTGCAGTTAGGAAAATACTGAAGAAATATGATAAGATCCATGTTTCCAAGCAAGGGCAATTATTTAAGTCAGAAGCACAGAGAATGCACATGGAAATTCTTCAGAGTCCCTGGCTTTGCGAGCTTATGGCCTTCCACATTAATTTAAGGGAAACCCAGGCCAATTTAATGAAGGCATCTGCTTTATTTGATGGATGTTCCCTAGAGATGAAGGATGAAAAACCATCACTTACTTGTAAGCTCTTTGATTCCATCAAGCTTGATGTTGACTTGACCTGCTCTATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCACATATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTAAGTATTGTAGATGGACTGAAGACAGCGCATCCTAAAGAAAAATGTCCTCTATGCCGGGAGAGAGGAGTTTATGAAGGTGCTGTTCACTTGGAAGAATTGAATATTCTGTTGGGCCGAAgTTGCCAGGAATACTGGGAACAAAGGCTTCAGGCGGAAAGGGCGGAGAGGGTGAAGCAAATAAAGGAGCACTGGGAAACTCAGTGCAGGGCGTTCATGGGCGTCTG 965 0.429 MKFCKKYQEYLQGQEKKLPGVGLKKLKKILKKCRRDCQSQRGPLAVQTCANSKCSVCDGAFFSSLRTEMSQVVGCFNHRAQKLLELHLASGFRKYFLWAKAKLGNHASLTAEGKDLVIYALINAIAVRKILKKYDKIHVSKQGQLFKSEAQRMHMEILQSPWLCELMAFHINLRETQANLMKASALFDGCSLEMKDEKPSLTCKLFDSIKLDVDLTCSICLDTVFDPVSLTCGHIFCYMCACSAASVSIVDGLKTAHPKEKCPLCRERGVYEGAVHLEELNILLGRSCQEYWEQRLQAERAERVKQIKEHWETQCRAFMGV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03014 321 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Bva04g03014 321 ProSiteProfiles SPX domain profile. 1 148 IPR004331 -
Bva04g03014 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 321 - -
Bva04g03014 321 SUPERFAMILY RING/U-box 210 268 - -
Bva04g03014 321 Pfam Zinc finger, C3HC4 type (RING finger) 214 267 - -
Bva04g03014 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 319 IPR013083 -
Bva04g03014 321 SMART ring_2 217 265 IPR001841 -
Bva04g03014 321 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Bva04g03014 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 321 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03014 Bva-Chr4 25197166 25200143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03014 214 266 C3H Transcription Factor Family AT4G28270 41.379 5.05e-07 47.8