Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02989 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCTTCAGGAAACACCGGGGAAGAAGTCCATCAAGAAAACGAGCAACAGCAGCTACAGAACCACTTGCATAACTCAAGTTCAGGACCTTCTGCTGCTGCTTGCAACGGCAATGGCTCTTCTAATCAACAGCAACCACAGCCTGCAACTAAAAAGAAACGACATCTTCCAGGGACTCCAGGCATGCAAATTCAACTACCTCTGAATTACCTTAATTATTaTCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGTCAACAAATAGATTCGTGTGTGAGGTCTGTAACAAAGGGTTCCGGAGGGATCAAAACCTTCAGTTGCACCGGAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACGACCACTGAGGTCAAGAAACGGGTCTATGTATGCCCTGAACCATCATGCGTGCACCATAACCCGGCTCGTGCATTGGGAGATCTCACTGGTATCAAAAAGCATTACAGCAGGAAACATGGCGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCAGTGCAATCTGATTGGAAAGCCCACCAGAAAACCTGCGGTACAAGAGAATATAAATGTGACTGTGGAACCATTTTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTTTGTGATACATTAACTGAGGAAAACAAGCGGGTGAACCAGGGTTTAAGCAATGGTATCCCACCAAACTTGCAAAATCAAATGCCAGATCTTATGTCTACAATGCCTATCAGCACCAGTTTTAACACAGCATTTGAATATAGCAACTACGACCCCAAGAACCCACTGAAATCCGTGCCCCAAGAACTTGTCTCTATGCCATTTAAGCCCATGAGCATGGATGGAGGCATGTTCTCGGCCAGTTCAGGTTCACTCTTTGGTGGTCCAAAAAGCAATTCCACCTCCTCTTCTACTCTTCAGCTTAGTTCCAACAGCTCCTCTGGTTTCAATTACTTCCCAGACAGCAAAAATGGAGGACTGATATCCGGATCAGCCCACATGTCAGCAACAGCTTTATTACAGAAAGCAGCTCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTTGTTTGTAGCATGGCTGGTTCTGACCCAATTAAACCACCGTCATATTCTGGTGCTATGCAGCAGCATAATCCCTCATATGACCAGTTCCATCCTCACCCTGATCAATCTGAAGTGGCTGGGATTAATAGTGGTGGAGCATTCAATAGCCCATTGTTTCAAGAGGGCCCACAAGAACTGTCACGGCTACTTGATCCTGATACTCCTGGACCAACAATGAATGAGATGGGAATGTTCACCCAAATATTCGATATGGGCAATGATCATAACCAAGGATTAATCAAGAATATGGAACGAGAAGCCAGTAATAGTTCGAATTTGATCCACGGAAGAGATGCAGCAGAAAGAAACCCAATGGGGCAATCGAGGTTTGGAGGGAGTGACATGACAACGGTTCATGACTTCTTGGGAGTTGAGGCTTCAACCTCAAGGGCAGGGAATTTGCAGGAATCACAACGCCATCAACAACAAAGTTTGGAATTAGGAGCAATAAACCAGCAGAGGTTACCACTTATAAATCACTTTCGCCATCACCTTCCACATGGCCATTCAGTTGTGGAGAAAACCATTTGGGATGTGTG 1721 0.4457 MSNISGDEGSFSSGNTGEEVHQENEQQQLQNHLHNSSSGPSAAACNGNGSSNQQQPQPATKKKRHLPGTPGMQIQLPLNYLNYYPNAEVIALSPTTLMSTNRFVCEVCNKGFRRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDTLTEENKRVNQGLSNGIPPNLQNQMPDLMSTMPISTSFNTAFEYSNYDPKNPLKSVPQELVSMPFKPMSMDGGMFSASSGSLFGGPKSNSTSSSTLQLSSNSSSGFNYFPDSKNGGLISGSAHMSATALLQKAAQMGATASNSINSPMMQKSFVCSMAGSDPIKPPSYSGAMQQHNPSYDQFHPHPDQSEVAGINSGGAFNSPLFQEGPQELSRLLDPDTPGPTMNEMGMFTQIFDMGNDHNQGLIKNMEREASNSSNLIHGRDAAERNPMGQSRFGGSDMTTVHDFLGVEASTSRAGNLQESQRHQQQSLELGAINQQRLPLINHFRHHLPHGHSVVEKTIWDV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02989 573 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 541 - -
Bva04g02989 573 Pfam Zinc finger, C2H2 type 103 125 IPR013087 -
Bva04g02989 573 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Bva04g02989 573 Gene3D Classic Zinc Finger 158 238 - -
Bva04g02989 573 Gene3D Classic Zinc Finger 86 148 - -
Bva04g02989 573 SUPERFAMILY beta-beta-alpha zinc fingers 102 200 IPR036236 -
Bva04g02989 573 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 541 - -
Bva04g02989 573 MobiDBLite consensus disorder prediction 1 60 - -
Bva04g02989 573 MobiDBLite consensus disorder prediction 1 71 - -
Bva04g02989 573 SMART c2h2final6 179 199 IPR013087 -
Bva04g02989 573 SMART c2h2final6 103 125 IPR013087 -
Bva04g02989 573 SMART c2h2final6 144 174 IPR013087 -
Bva04g02989 573 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02989 Bva-Chr4 25090658 25092836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02989 33 369 IDZ Gene Family AT3G50700 50.000 1.21e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02989 zf-C2H2 0.0015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02989 - - gmx:100782774 734.176