Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02979 ATGGAGTTGTACGGACGCAATCCGGCGAGGAATGGGTCGCAATCTGGTAATCAATCTGAATGGCGTCCAGCAAGTGGCGAGACTGGCCTCGAAGAATCGATGTGGCACCTGGGACTGAGTAGCAGTGAATCGTACCCGGAGCGACCCGGCGTACCCAATTGTGTCTATTACATGCGAACCGGGTTTTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCTGCAGCTGTAATAGCTACAGGGGAGTACCCAGAACGGGTGGGGGAACCTCCATGTCTGTATTACTTAAAAACTGGAACCTGTAAATTTGGCGCATCCTGTAAATTCCACCATCCCAAACATGGAGGTGGATCTTTAAGCCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCCGGGTGCGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACATGTAAATTCCATCATCCTCAATCCGCTGGCTCATCAGGTCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCCACAGTTCCTCTTTCTGAACAGTATGGAGGAGCATCATCCAGTTTGAGAGTGGCTAGGCCTCCAATGTTGCCTGGTTCATATGTGCAAGGGGCCTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTCCCAGGATGGAATCCTTACTCGGCACCTGTAAGCCCCGTCTTGTCTCCTGGTGCTCAACCTGCTGTTGGAGCTACTTCTCTCTATGGAGTGACCCAGCTGTCTTCAACAACATCAGCGTTTGCTAGACCATATACTCCTCTGCCTTCCTCCACTGAGCCTTCTGGTAGTAGCCAAAAGGAACCAGTATTTCCAGAAAGACCTGATCAACCTGAATGCCAATATTATCTGAGAACAGGGGATTGTAAATTTGGATTATCCTGTCGGTATCATCATCCTCAGGACCAGGCTGTGATCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGCCCGGGAGCAGAACCATGTGCATTTTACTTGCAAAATGGGCATTGCAAGTTTGGGTCTACATGCAAATTTGATCATCCTTTGGGATCGGTAAGATATAGTCCATCAGCATCTTCGCTCATTGATATGCCAGTGACTCCATACCCAGTTGGGTCCTTACTATCTACCCTAGCTCCTTCAACTACCTCTTCAGAGCTTCGACCTGAACTAATGTCAGGTTCCAAAAAGGAATCCTTTACAACCAGATTGCCTTCTTCTGGAAACGGTTCTAGCAATTCTGtcagtttaatttttacacaGACTGGATCTGTCTCGCTCACTGATGTGCAACTATCAAGTCAGAGTTCTGCCCCTTTAAGTAGTAGTAGAATCACTAGATA 1397 0.4753 MELYGRNPARNGSQSGNQSEWRPASGETGLEESMWHLGLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVIATGEYPERVGEPPCLYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGAKECSYYLKTGQCKFGITCKFHHPQSAGSSGPASAPQFYQQVQSPTVPLSEQYGGASSSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSTTSAFARPYTPLPSSTEPSGSSQKEPVFPERPDQPECQYYLRTGDCKFGLSCRYHHPQDQAVIRPLLSPIGLPLRPGAEPCAFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLIDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGSKKESFTTRLPSSGNGSSNSVSLIFTQTGSVSLTDVQLSSQSSAPLSSSRITR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02979 465 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Bva04g02979 465 MobiDBLite consensus disorder prediction 1 25 - -
Bva04g02979 465 MobiDBLite consensus disorder prediction 8 24 - -
Bva04g02979 465 Gene3D - 295 378 - -
Bva04g02979 465 Gene3D - 50 125 - -
Bva04g02979 465 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Bva04g02979 465 MobiDBLite consensus disorder prediction 271 288 - -
Bva04g02979 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Bva04g02979 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Bva04g02979 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Bva04g02979 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Bva04g02979 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Bva04g02979 465 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Bva04g02979 465 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Bva04g02979 465 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Bva04g02979 465 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Bva04g02979 465 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Bva04g02979 465 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Bva04g02979 465 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Bva04g02979 465 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Bva04g02979 465 MobiDBLite consensus disorder prediction 398 430 - -
Bva04g02979 465 MobiDBLite consensus disorder prediction 271 299 - -
Bva04g02979 465 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Bva04g02979 465 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Bva04g02979 465 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Bva04g02979 465 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 454 - -
Bva04g02979 465 SUPERFAMILY CCCH zinc finger 299 325 IPR036855 GO:0046872
Bva04g02979 465 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Bva04g02979 465 Gene3D - 126 172 - -
Bva04g02979 465 PANTHER PROTEIN PHOSPHATASE RELATED 17 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02979 Bva-Chr4 25028738 25033366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02979 1 444 C2H2 Transcription Factor Family AT5G18550 51.940 1.37e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g02979 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02979 - - gmx:100812475 790.03