Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02971 ATGGAAGACTCTGCAACTGAAGCGAGAGACCGGATTGGCAGATTGCAGTATGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCCCCGTGTTGCGATCAGATCTTCCCATGTCGCCACTGCCACAATGAGGCCATgAGCTCACTTAACGATCCCAAAGATCGTCACGAACTGGTCAGACGCGATGTTAAGCAAGTTGTATGTTCAATCTGTGACACTGAACAGGAGGTTTCCAAGACGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGTGAGATTTGCAAATTCTACGACGATGATACGGATAAAGGGCAATTCCATTGTGATGACTGTGGGATTTGCAGgGTTGGTGGACGTGACAACTTCTTTCACTGTCTGACATGTGGATCTTGCATTGCAGTGAGCTTGCTAAACAATCACTTATGTGTAGAGAACTCAATGAAGAGCCACTGCCCTGTCTGTTACGAGTATCtgtttgattcaattaaaGGCACCACAATTTTGAGGTGTGGTCATACAATGCACATGGAATGCTTTCAAGAAATGGCAACTCAAAATCAGTATCGTTGCCCTATCTGCTTAAAGACAATATTTGATATGACTGAAGACTGGAGACATTTAGATCGAGAGATTGAAGCCGTTCCCATGCCTGAGGAGTATAATTTCGAGGTCTCAATTCTGTGCAATGATTGTAACAATACAAGCACAGTACCCTTTCACATTTTAGGCCACAAGTGTAGACATTGCAGTTCCTACAACACCCGTAGGATTTCAACACCGGAGCATCGATG 800 0.4325 MEDSATEARDRIGRLQYGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLNDPKDRHELVRRDVKQVVCSICDTEQEVSKTCSNCGVNMGEYYCEICKFYDDDTDKGQFHCDDCGICRVGGRDNFFHCLTCGSCIAVSLLNNHLCVENSMKSHCPVCYEYLFDSIKGTTILRCGHTMHMECFQEMATQNQYRCPICLKTIFDMTEDWRHLDREIEAVPMPEEYNFEVSILCNDCNNTSTVPFHILGHKCRHCSSYNTRRISTPEHR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02971 266 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 12 260 IPR031109 GO:0008270|GO:0016567
Bva04g02971 266 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Bva04g02971 266 Pfam Zinc-ribbon 201 258 IPR039512 -
Bva04g02971 266 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Bva04g02971 266 SMART ring_2 154 196 IPR001841 -
Bva04g02971 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 224 IPR013083 -
Bva04g02971 266 Gene3D - 225 264 - -
Bva04g02971 266 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Bva04g02971 266 SUPERFAMILY RING/U-box 153 201 - -
Bva04g02971 266 Pfam Ring finger domain 153 196 IPR001841 -
Bva04g02971 266 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Bva04g02971 266 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Bva04g02971 266 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Bva04g02971 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 12 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02971 Bva-Chr4 24998455 25002293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02971 17 262 C2H2 Transcription Factor Family AT3G18290 44.664 3.41e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02971 K10144 - gmx:100818374 466.463