Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02970 ATGAGCAATTCTCTGAGACACCCACATCCTTCATGTAAAGATCAAAAGCAGAGAGCATGCGACTATTGTGGAGACTCCACCGCTCTCCTCTATTGCCGAGCTGATTCTGCAAAGCTATGTTTCTCCTGCGATCGAGAAGTTCACTCCACCAACCAGCTTTTCTCAAAGCACACTCGCACTCTCCTTTGTGACGCTTGTGATGCTTCCCCGGCTACAATTCTCTGTTCCACAGAAAACACTGTTATCTGCCAGAATTGTGACTGGGAAACGCACAATCTTGCACTGTCTTCGGTGCATGAACGGAGGCCTCTCGAGGGATTTACTGGGTGCCCTTCTGTGACTGAGTTGTTAACAATTGTTGGATTCGAAGATTTGGGCAAAAAAGCTTTGCTTTTGACTCATGAAAGCGATGGTCGTGGCTGTGGCGGCGGTGACGGCACTGCTACCTGTGATGGATTTCTGGGGTTTGAGCTTGAAGGCTTCTCGGATTTGTTGGTGTGGGATGCTCCTGCTGTTGTTAGCCTCGATGATTTGATTGCCTCCAGTGTTTCGCCTCATAATTACCAAGCTATGGAGGTTCCTCCACTGCCCAAGAATCGGAAGGCTGCTTGTGGGCGacacaaagaagaaatttttagtCAGCTTCGTGAACTAGCCAAGTTGGAGCCCAACTTGAATGATGAAGATGTAGATTTAGATCCAGATACTGAGCGCTTGAGCAATATGCAACAATTGGTACCTGAACAAAATGTTTTCTCGCGAGATTTGGCCACAGGTTTCGAATGTGACATTGAGGCTGGTATATGTCCTACTTTTGAGGCGGGTGATTTTCGGTGGCACAACCATAGCAGTGAGTCTGCACATGAAGTTGTTCCTCCTAGTACAGCATTAAATTCAGAGGAAATTTTCGTTATCGATAATCATTCAATTTCTGCTGTGCACAATGGAGGGCAACCAAAGTCTTTTAACTGTAAATCTTTATCAGCAACGCCTAAGGTTTCCCCGTATGAGTTAACGAGCCAAGAAAGAGATTCTGCAATATTACGGtataaggagaagaagaaagcaagaagATTCGACAAGCACGTAAGGTATGAATCACGTAAAGTTCGAGCAGAAAGCAGGACAAGAATAAAGGGCAGATTTGCCAAGATTGAGCACTA 1163 0.4428 MSNSLRHPHPSCKDQKQRACDYCGDSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDASPATILCSTENTVICQNCDWETHNLALSSVHERRPLEGFTGCPSVTELLTIVGFEDLGKKALLLTHESDGRGCGGGDGTATCDGFLGFELEGFSDLLVWDAPAVVSLDDLIASSVSPHNYQAMEVPPLPKNRKAACGRHKEEIFSQLRELAKLEPNLNDEDVDLDPDTERLSNMQQLVPEQNVFSRDLATGFECDIEAGICPTFEAGDFRWHNHSSESAHEVVPPSTALNSEEIFVIDNHSISAVHNGGQPKSFNCKSLSATPKVSPYELTSQERDSAILRYKEKKKARRFDKHVRYESRKVRAESRTRIKGRFAKIEH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02970 387 Pfam B-box zinc finger 16 60 IPR000315 GO:0008270
Bva04g02970 387 Pfam B-box zinc finger 62 104 IPR000315 GO:0008270
Bva04g02970 387 ProSiteProfiles Zinc finger B-box type profile. 58 104 IPR000315 GO:0008270
Bva04g02970 387 CDD Bbox1_BBX-like 19 62 - -
Bva04g02970 387 Pfam CCT motif 343 384 IPR010402 GO:0005515
Bva04g02970 387 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Bva04g02970 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 15 387 - -
Bva04g02970 387 SMART bboxneu5 63 104 IPR000315 GO:0008270
Bva04g02970 387 SMART bboxneu5 15 62 IPR000315 GO:0008270
Bva04g02970 387 ProSiteProfiles CCT domain profile. 343 385 IPR010402 GO:0005515
Bva04g02970 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 15 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02970 Bva-Chr4 24994786 24997347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02970 15 358 C2C2-CO-like Transcription Factor Family AT2G47890 40.000 5.08e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva04g02970 CCT 2.2e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02970 04 24994786 24997347 Bva13g02919 13 21045403 21047824 BWGD